MidgeBase gene description page [Pn.09787]
Outline
| Gene ID | Pn.09787 |
| Type | Protein coding gene |
| Scaffold | PnScaf10182 |
| Start | 712 |
| End | 3722 |
| Direction | + |
Sequence
Transcript: 1839 (bp)
ATGTTCCAATCGACAGTCATCGCTTTCATTACGCTGGCCGCCGTGCTTTTCGCTGCGGCCGCCGACAACGGCTGGTACAGAACGGCGAGTTTCTACCAGATCTACCCGCAGACCTTCTACGACGGCGGCGGAGGGTCGCGCGAGGGCTTCGGCACCTTCAAGGGCATCCAGGCGAAAATTCCCTACTTCAAGGAGCTGGGCGTCGACTGTCTGTGGCTGACGCCCATTTTCGAGTCCTCGTTCAACGCCTTCGGCTACGACATCACTAACTACGAGGAGATCGACTCGCGCTACGGAACGAAGGCGGACTTCGAGAGCCTCGTCAAGGCCGTCCACGAAAACGGCCTCAAAATCATCGTCGACTTCGTGCCGAACCATTGCGGCTACGAGCACCCGTTCTTCCAGAAGTCGCTCGCCAAAGATCCCGTCTACGACAACTGGTTCGTGTGGCTGCCCGGAAAGGGCCCCAACAAGGACCAGCCGCCGTCGAATTGGCAGCGCATCGGCGGCGACCTCGGCAGCGCCTGGAACCGCCGTCTCGACGACAAACCCATCGAAAATCGCACCGAGTTTTTCTACGCGCAATTCTACTGGAGCATGCCGGACTTTAATTTGCGCGAGCCGGCAGTGAAGCAGTACTGGGAGAAGTTCCTCAACATGTGGCTCGAGTTCGGCCTCGATGGCTTCCGGGTGGACGCGATTTCGCACGGATTCGAGGTCGAGCCGGTCGACGGCCAGGTGCCGGACGAGGCCATAAATGTGGGCGTCGAACGCGAGGACGACTTCAGCTACCTGCATCATAATCTCACGCAGGACCTGCCCGAGCTGTTCGAGCTCATCTACGACTGGCGCGACATTCTGGACAAGTTCGAGGATAGCGCGAGAATTTTCATGACCGAAAGCTACTCAGCGCCCGAGACAATCATGAAGTTCTACCGCAATGCAGATAACAGCCGCAAGGGCGCTCACTTGCCCTTCAACTTTCAGTTCATTCGCATCATCCGTCCCAACTCGACAGCCGAAGACTTCGTCGATACTGTCAATGATTGGTTTGAACTTTTGCCAGATGGAGAGGTCACTAACTGGGCTATTGGCAACCACGACCAGTCGCGCGTGGCGTCGCGTTTCGGCAAGCAGCGCGTGGACATCTTCAACATGCTGTGCACGCTGCTGCCCGGCACCAGCGTAACCTACTACGGCGAGGAGATCGGGATGGAGGACTCGTGCGTCAACTACAACATCGACCGCAACGAGCCGGGCTCGCGGTGCAGCGGCGGCGCGACTTCCAACTCCGACGCTCGCTACCGCACGCCCATGCAGTGGTCGAACGTGACAAATGGCGGCTTCACCAACTCGAGTCGGCCTTGGCTGCCGATCGGCGACAAGTACGCGACGGTGAATGTCGAGGCGCAGCGCGGCGTGCCCGGCAGCCACTTGGAAATTTACAAAAGTTTGCTCAAAATTCGCAAGCACAAGGCCGTCGCGGAGAGCACGCTCGCGGGCTTCAAGATCGTCAAGCTCGGCAGCTACTCCTTCGGCTTCAAGCGCGAGCTGAGCGATGCCGCCGAGCAGAGCGTCCTGGTGCTGATAAACTACGGCGAGAGCGCCGAAACTGTGACGCTGAAGGAGCTCGCGCTGGTCGGCGAACCGGCGTTGATGACGCTGGAAATTGTGAGCGGAAACTCGAGGTTTGAGATCGGCCAGCAGCTGAGTGTGGGCGACGAGCTGAAGCTGGAGCCCTTTGAGGCTCTCGTCGCTGTCTACAACAGCTCGCGAAAGGTCGGGGCGATCGGAATGGCCGTTTTGGTCATACTTTGTGCTGCCCTCAAAGTTTTGGTC
Protein: 613 (aa)
MFQSTVIAFITLAAVLFAAAADNGWYRTASFYQIYPQTFYDGGGGSREGFGTFKGIQAKIPYFKELGVDCLWLTPIFESSFNAFGYDITNYEEIDSRYGTKADFESLVKAVHENGLKIIVDFVPNHCGYEHPFFQKSLAKDPVYDNWFVWLPGKGPNKDQPPSNWQRIGGDLGSAWNRRLDDKPIENRTEFFYAQFYWSMPDFNLREPAVKQYWEKFLNMWLEFGLDGFRVDAISHGFEVEPVDGQVPDEAINVGVEREDDFSYLHHNLTQDLPELFELIYDWRDILDKFEDSARIFMTESYSAPETIMKFYRNADNSRKGAHLPFNFQFIRIIRPNSTAEDFVDTVNDWFELLPDGEVTNWAIGNHDQSRVASRFGKQRVDIFNMLCTLLPGTSVTYYGEEIGMEDSCVNYNIDRNEPGSRCSGGATSNSDARYRTPMQWSNVTNGGFTNSSRPWLPIGDKYATVNVEAQRGVPGSHLEIYKSLLKIRKHKAVAESTLAGFKIVKLGSYSFGFKRELSDAAEQSVLVLINYGESAETVTLKELALVGEPALMTLEIVSGNSRFEIGQQLSVGDELKLEPFEALVAVYNSSRKVGAIGMAVLVILCAALKVLV
| Type | Start | End | Length |
| CDS |
712 |
1595 |
884 |
| CDS |
2364 |
2568 |
205 |
| CDS |
2970 |
3719 |
750 |
| intron |
1596 |
2363 |
768 |
| intron |
2569 |
2969 |
401 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001985948 |
GH21093 [Drosophila grimshawi] gb|EDW00815.1| GH21093 [Drosophila grimshawi] |
1e-116 |
| InterPro |
IPR006589 |
Glycosyl hydrolase, family 13, subfamily, catalytic domain |
|
| InterPro |
IPR015902 |
Glycoside hydrolase, family 13 |
|
| InterPro |
IPR017853 |
Glycoside hydrolase, superfamily |
|
| InterPro |
IPR006047 |
Glycosyl hydrolase, family 13, catalytic domain |
|
| InterPro |
IPR013781 |
Glycoside hydrolase, catalytic domain |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(MF) |
GO:0043169 |
cation binding |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00128.19 |
Alpha amylase, catalytic domain |
1.7e-75 |
| Pfam |
PF02324.11 |
Glycosyl hydrolase family 70 |
0.00055 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.07390 |