MidgeBase gene description page [Pn.09760]
Outline
| Gene ID | Pn.09760 |
| Type | Protein coding gene |
| Scaffold | PnScaf10124 |
| Start | 14 |
| End | 5720 |
| Direction | - |
Sequence
Transcript: 411 (bp)
ATGATGGTGTCATTTCAATTGCGTCCGAATGCAAATGACATACAAGGAGAACGAGAAGCGCAAAAGCAGTTCAAAATTCTCAACATCGATCGGCTGCACACTTTTCATCAGCCCGCAATGGGCATATCGGAGGACACGAAACTAGAGGAGATACCACGCGAGGGCCGCTCGCCTCAGGACAATCGTTCGAGTGCGACGACTAGTCTCGGGGGCCACAGTCCAATGTCTGATCATAGCGACGTGGACTTGGACAACGAGTATCCGCAGAAGCGCAAGCAACGTCGCTATCGCACTACCTTCACCAGCTTCCAGCTCGAGGAACTTGAAAAGGCCTTCGCACGAACGCATTATCCCGACGTATTTAGTAACTGTCTCACATCACAGTACCCGAGCAGCACAGTGCGACATTGG
Protein: 137 (aa)
MMVSFQLRPNANDIQGEREAQKQFKILNIDRLHTFHQPAMGISEDTKLEEIPREGRSPQDNRSSATTSLGGHSPMSDHSDVDLDNEYPQKRKQRRYRTTFTSFQLEELEKAFARTHYPDVFSNCLTSQYPSSTVRHW
| Type | Start | End | Length |
| CDS |
17 |
61 |
45 |
| CDS |
285 |
613 |
329 |
| CDS |
5684 |
5720 |
37 |
| intron |
62 |
284 |
223 |
| intron |
614 |
5683 |
5070 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_317481 |
AGAP007985-PA [Anopheles gambiae str. PEST] gb|EAA12409.4| AGAP007985-PA [Anopheles gambiae str. PEST] |
2e-19 |
| InterPro |
IPR001356 |
Homeodomain |
|
| InterPro |
IPR009057 |
Homeodomain-like |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0043565 |
sequence-specific DNA binding |
|
| Gene Ontology(MF) |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
| Pfam |
PF00046.24 |
Homeobox domain |
3.1e-07 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA006006-TA |
| S. invicta |
SI2.2.0_11608 |
| P. vanderplanki |
Pv.09731 |
| T. castaneum |
TC013331 |
| C. quinquefasciatus |
CPIJ012080 |
| A. aegypti |
AAEL012405 |