MidgeBase gene description page [Pn.09752]
Outline
| Gene ID | Pn.09752 |
| Type | Protein coding gene |
| Scaffold | PnScaf10108 |
| Start | 20153 |
| End | 22547 |
| Direction | - |
Sequence
Transcript: 1446 (bp)
ATGTCAGAGCTGAATTCAGTACAAAGATTTTATAAGGATAAGACAATCCTGATAACGGGCGGCAGTGGATTCATGGGAAAAATTCTCATCGAAAAGCTCCTCTACTCGTGCTCAGAGATTAAGGAAATAATTTTGGTGATGCGCTCGAAACGCGGAAAGCCTCCGAGCGAGCGAATTCAAGGCTACGAAAAGCTGCCCATGTTCAAGCGCATCGTGGAGGAGAAGCCCGAGATGTTTCGCAAACTCACCGTCTTTGCTGGCGAAATTTCCGAGCCAAACATGGGCCTCAGCCAGCCAGACCTGAAATATGTCATTGAGAATGTGCAAATTATTTTCCATCTCGCCGCTTCGCTCAAGCTCGAGGCGACGCTCAAGCCAAACGTGATCTTGAACTTGACGGGAACCAAGTACGTCCTCGACGTCGCGAAATTGGTCAAAAACCTAATCATCATGGTTCACACCTCGACCGCCTTCTGCAACATCGATCAGAAGGTCGTCGGCGAAGAAGTTTACGACTTTCCGCATCGACCCGAGGACCTCATGCGCTGCACCGAGTGGATGTCCGAGGAGGCGATGGCGAAGATGCAGAACGAGCTGCTCATGTTTCAGCCGAACACGTACACTTACACGAAGCGACTCGCCGAAATTCTTGTGCGCGACGAGTACTACAAGAGCGGCCTCAACGTCTGCATTGTGCGGCCGAGCATCGTCACGCCGACCTTTTGGGAGCCGATCATGGGATGGGTTGACTCGCTGAACGGACCTCCGGGCATTGGCGTTGCCATCGGCAAGGGAGCACTGAGAACAATGCTAGTCGACCCGAAAGCCTCAGTCGAAGCCGTTCCCTGCGACATGGCGGTCAATGGTTTGATCATGTTTGCAAAGAAACTCGGAACAACGCCGGAAAGACCGAAAGACATTCAAGTTTGTAACATCACGGCGCACGAGAGCTCGAAGGTCACCAACGGCTATGTGTACGACGAGGGAAAGAAGCACCGATGGTCGGTTCCCTTCTCGCAAATGCTTTGGTTTCCTAATTGCGCAATCACGCAAAGTAAACTCTACTACACCATCAATGTGCTGCTCTTCCAGTGGATTCCGGCATATCTGGTCGATTTCTTGCTGTGGATTTTCCGACAGCCCCGATTCATGGTCAAAGTTCAACGCAAAATCTCCATCGGCATGGATGTCCTGCAATTCGTTACAATGAACGATTGGAATTTCAAATCGGACAACTATTTCAGCTTGGTCGACATTCAAGATCGAGAGGAGTGGGAAATACTCTACCTCCTCGACATATTCTGTAAATGCGTGTTCTTCTTCTGGCTCGGAAAGAAGCTTCTGGTGCACACGGGTTTTTACGACAATGTTGTCGAGCTGATCAATGAAACGCAAGAGCGACTTTTGAGGCAAAATTACAGCGACGGCCAGCTCGTTTTCCCGTCA
Protein: 482 (aa)
MSELNSVQRFYKDKTILITGGSGFMGKILIEKLLYSCSEIKEIILVMRSKRGKPPSERIQGYEKLPMFKRIVEEKPEMFRKLTVFAGEISEPNMGLSQPDLKYVIENVQIIFHLAASLKLEATLKPNVILNLTGTKYVLDVAKLVKNLIIMVHTSTAFCNIDQKVVGEEVYDFPHRPEDLMRCTEWMSEEAMAKMQNELLMFQPNTYTYTKRLAEILVRDEYYKSGLNVCIVRPSIVTPTFWEPIMGWVDSLNGPPGIGVAIGKGALRTMLVDPKASVEAVPCDMAVNGLIMFAKKLGTTPERPKDIQVCNITAHESSKVTNGYVYDEGKKHRWSVPFSQMLWFPNCAITQSKLYYTINVLLFQWIPAYLVDFLLWIFRQPRFMVKVQRKISIGMDVLQFVTMNDWNFKSDNYFSLVDIQDREEWEILYLLDIFCKCVFFFWLGKKLLVHTGFYDNVVELINETQERLLRQNYSDGQLVFPS
| Type | Start | End | Length |
| CDS |
20156 |
20321 |
166 |
| CDS |
20665 |
20796 |
132 |
| CDS |
20977 |
21174 |
198 |
| CDS |
21246 |
21287 |
42 |
| CDS |
21344 |
21509 |
166 |
| CDS |
21746 |
22289 |
544 |
| CDS |
22350 |
22547 |
198 |
| intron |
20322 |
20664 |
343 |
| intron |
20797 |
20976 |
180 |
| intron |
21175 |
21245 |
71 |
| intron |
21288 |
21343 |
56 |
| intron |
21510 |
21745 |
236 |
| intron |
22290 |
22349 |
60 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002005331 |
GI19136 [Drosophila mojavensis] gb|EDW09266.1| GI19136 [Drosophila mojavensis] |
1e-124 |
| InterPro |
IPR004262 |
Male sterility |
|
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR013120 |
Male sterility, NAD-binding |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0016620 |
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Pfam |
PF01073.14 |
3-beta hydroxysteroid dehydrogenase/isomerase family |
5.5e-12 |
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
1.2e-07 |
| Pfam |
PF03015.14 |
Male sterility protein |
2e-12 |
| Pfam |
PF02719.10 |
Polysaccharide biosynthesis protein |
0.00027 |
| Pfam |
PF07993.7 |
Male sterility protein |
2.5e-60 |
| Pfam |
PF08659.5 |
KR domain |
0.041 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.00870 |
| Pn.10426 |
| Pn.00872 |
| Pn.09751 |
| Pn.04390 |
| Pn.09750 |
| Pn.00505 |
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA000659-TA |
| D. melanogaster |
FBgn0043792 |
| H. melpomene |
HMEL012267-PA |
| H. melpomene |
HMEL009811-PA |
| A. mellifera |
GB18895-PA |
| P. vanderplanki |
Pv.01653 |
| P. vanderplanki |
Pv.01652 |
| P. vanderplanki |
Pv.08846 |
| S. invicta |
SI2.2.0_08200 |
| B. mori |
BGIBMGA006569-TA |
| A. aegypti |
AAEL014302 |
| A. gambiae |
AGAP003611 |
| P. vanderplanki |
Pv.14417 |
| P. vanderplanki |
Pv.00546 |
| P. vanderplanki |
Pv.07337 |
| D. plexippus |
DPOGS208129PA |
| P. vanderplanki |
Pv.03987 |
| P. vanderplanki |
Pv.07338 |
| D. plexippus |
DPOGS200094PA |
| T. castaneum |
TC000107 |
| P. humanus |
PHUM561380-PA |