MidgeBase gene description page [Pn.09751]
Outline
| Gene ID | Pn.09751 |
| Type | Protein coding gene |
| Scaffold | PnScaf10108 |
| Start | 17227 |
| End | 19624 |
| Direction | - |
Sequence
Transcript: 1545 (bp)
ATGGCAGACAAATTGAATTCGGTGCAGCAGTTCTACAAGGACAAGACGATCTTCATCACGGGCGGGAGCGGCTTTATGGGCAAAGTCCTCATCGAGAAGCTCCTCTACTCGTGCTCGGACGTGAAGGAGCTCATCATCCTCATGCGTCCGAAGCGCGGAAAGACGGCGAGTCAGCGCGTCGAGGACTTTGCGAAATTGCCCATGTTCAAGCGCCTGACGGAGGAGAAGCCCGAAATGCTGAAGAAGATTTACCCGGTGTGGGGCGAGATTACGCAACCGAATCTGGGTCTGAGCGACGAACATTTGTCGCGAGTCATCAACACGACTCAGCTCGTTTTCCATCTTGCCGCTTCGCTGAAGCTCGAGGCGACTTTGCGGCCGAATGTCCAGATGAACTTGAGCGCCACCAAGACGGTGCTGGACCTGGTGAAGCAAATGAAGAGCCTCATCTACATGATCCACACGTCGACGGCGTTCTGCAACGTCGAGCTCGAGACGCTCGAGGAGAAGGTCTACGATTTTCCGCACAAGCCGTTGGACCTCATACGCTCGGCCGAGTGGATGACGGACGAGGCAATGGCGTCCATTCAGAGCGACGTTCTCGGCGTTCATCCGAACACATACACGTACACCAAGCGACTCGCCGAAATACTCGTGCGCGACGAGTATGTCGACAACAAATTGCCGGTGTGCATCGTTCGGCCGTCGATTGTCACGCCATCCTACATGGAGCCCATTCCCGGATGGGTCGATTCGCTGAACGGACCGCCGGGCATTATCGTGGCAGTTGCGAAGGGCGCACTCAGATGCATGCTGCTCAACACAGAGGCCAACTTCGAGGCTATTCCCGTCGATCTCGCCATCAACGGACTCATCATGATCATGAAAAGCCAGGCGACGCAGGCACAGAGGTCGAAAGACATTCCAGTTTTCAACGTGACAAACCACGAAAGTACGCGCATGACCTACGGGCAGTTTTTCAACATCTGCAACTCGATGAAGTTCGAGACGCCGTGCTCAATCAGCCTCTGGTATCCGAACGCTTCGCTGACGTTGAACAAATTTTACTACTATCTCAACGTCATTCTCTTCCAATGGCTGCCGGCGCTCTTCGTGGACTTTCTCCTGCTGATTTTCGGTCAAAAGAGATTCATGATCCACGTTCAGAAGAAGATAGCAATCGGCATGGACGTGCTCGCATGCTTCACCATGAACGATTGGAACTTCAAGTCGAAGAACTTTGAGAACTTGATACAGATCCAATCGAAAGATGAATATGACATGTTTTTCATCGACTCGAAGAAAATCGATACGGTTGCGACCACAAAGCAGTCGATAATTGGCGGCAGGGTGTATTGCATAAAAGACCCGATGTCGACAATTCCGAAAGCGAAGCGGCTGATTTGGATCCAATACATCATCGACCGGGTCATTAAGTTCTTCTTCTTCTACTGGCTGACGAAGAAAATCTTGATTTATGCCGGCCTGATGGACGCCACGACGGATGTGCTTGAGAGACTCCAAGGCGCGCTTTATCGAAGGAGT
Protein: 515 (aa)
MADKLNSVQQFYKDKTIFITGGSGFMGKVLIEKLLYSCSDVKELIILMRPKRGKTASQRVEDFAKLPMFKRLTEEKPEMLKKIYPVWGEITQPNLGLSDEHLSRVINTTQLVFHLAASLKLEATLRPNVQMNLSATKTVLDLVKQMKSLIYMIHTSTAFCNVELETLEEKVYDFPHKPLDLIRSAEWMTDEAMASIQSDVLGVHPNTYTYTKRLAEILVRDEYVDNKLPVCIVRPSIVTPSYMEPIPGWVDSLNGPPGIIVAVAKGALRCMLLNTEANFEAIPVDLAINGLIMIMKSQATQAQRSKDIPVFNVTNHESTRMTYGQFFNICNSMKFETPCSISLWYPNASLTLNKFYYYLNVILFQWLPALFVDFLLLIFGQKRFMIHVQKKIAIGMDVLACFTMNDWNFKSKNFENLIQIQSKDEYDMFFIDSKKIDTVATTKQSIIGGRVYCIKDPMSTIPKAKRLIWIQYIIDRVIKFFFFYWLTKKILIYAGLMDATTDVLERLQGALYRRS
| Type | Start | End | Length |
| CDS |
17230 |
17365 |
136 |
| CDS |
17478 |
17603 |
126 |
| CDS |
18083 |
18214 |
132 |
| CDS |
18281 |
18520 |
240 |
| CDS |
18600 |
18765 |
166 |
| CDS |
18823 |
19366 |
544 |
| CDS |
19424 |
19624 |
201 |
| intron |
17366 |
17477 |
112 |
| intron |
17604 |
18082 |
479 |
| intron |
18215 |
18280 |
66 |
| intron |
18521 |
18599 |
79 |
| intron |
18766 |
18822 |
57 |
| intron |
19367 |
19423 |
57 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_313370 |
AGAP003611-PA [Anopheles gambiae str. PEST] gb|EAA08761.5| AGAP003611-PA [Anopheles gambiae str. PEST] |
1e-143 |
| InterPro |
IPR004262 |
Male sterility |
|
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR013120 |
Male sterility, NAD-binding |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0016620 |
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Pfam |
PF01073.14 |
3-beta hydroxysteroid dehydrogenase/isomerase family |
2.5e-08 |
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
9.2e-08 |
| Pfam |
PF03015.14 |
Male sterility protein |
3.5e-20 |
| Pfam |
PF02719.10 |
Polysaccharide biosynthesis protein |
0.00042 |
| Pfam |
PF07993.7 |
Male sterility protein |
8.3e-64 |
| Pfam |
PF01624.15 |
MutS domain I |
0.066 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.00870 |
| Pn.10426 |
| Pn.00872 |
| Pn.04390 |
| Pn.09750 |
| Pn.09752 |
| Pn.00505 |
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA000659-TA |
| D. melanogaster |
FBgn0043792 |
| H. melpomene |
HMEL012267-PA |
| H. melpomene |
HMEL009811-PA |
| A. mellifera |
GB18895-PA |
| P. vanderplanki |
Pv.01653 |
| P. vanderplanki |
Pv.01652 |
| P. vanderplanki |
Pv.08846 |
| S. invicta |
SI2.2.0_08200 |
| B. mori |
BGIBMGA006569-TA |
| A. aegypti |
AAEL014302 |
| A. gambiae |
AGAP003611 |
| P. vanderplanki |
Pv.14417 |
| P. vanderplanki |
Pv.00546 |
| P. vanderplanki |
Pv.07337 |
| D. plexippus |
DPOGS208129PA |
| P. vanderplanki |
Pv.03987 |
| P. vanderplanki |
Pv.07338 |
| D. plexippus |
DPOGS200094PA |
| T. castaneum |
TC000107 |
| P. humanus |
PHUM561380-PA |