MidgeBase gene description page [Pn.09656]
Outline
| Gene ID | Pn.09656 |
| Type | Protein coding gene |
| Scaffold | PnScaf10017 |
| Start | 32533 |
| End | 33527 |
| Direction | + |
Sequence
Transcript: 861 (bp)
ATGGACAATCTTATGAGTCCTTATTCGAACCTGAGCATGGGCACCACCACGCCTTTGCATCATCCAGACGAAGACTTAGCGAATTTCCAACATCAACAACAAAACAATGTTTATTTGCCTAAACAAATGAATTTCGCTCCTCCTCATGCTCCACCACCGCTGATGATGACCCAGCCATCGACTCCCCATAGTCACTTTATTCCGATGACTCCTCAGCAACAGCCCCCGTCAGTTTCAGAAGCTCCGCCGTCATCCATCCCCAAAGTAAACACACCAGCGATCGATGCGAGTCCGATGTTTAATCCCATGACTCCGCTAGATTCGTCTATCTTGCCTCAACTCCAAAACATCGTATCCACAGTGAATCTGAACTGTAAGCTTGACCTGAAGAAAATTGCATTGCATGCCCGTAACGCTGAGTACAATCCGAAACGTTTTGCGGCTGTAATCATGAGAATTCGTGAGCCGAGAACAACTGCCTTAATTTTTTCTTCGGGCAAGATGGTGTGCACAGGAGCAAAGAGCGAGGACGACTCAAGACTGGCTGCAAGAAAATACGCTCGAATCATTCAAAAGTTGGGCTTCAATGCAAAATTCCTAGATTTTAAGATCCAGAATATGGTGGGAAGTTGTGACGTTAAGTTTCCTATTCGACTCGAAGGGCTCGTGCTCACGCACGGCAAGTTTAGCAGTTACGAACCTGAACTGTTTCCTGGTCTAATTTATCGTATGGTGAAACCCAGAATTGTGCTACTGATATTCGTTAGTGGAAAAGTCGTCTTAACCGGTGCGAAAGTACGGCAGGAAATTTATGACGCCTTCGACAACATCTTTCCCATTTTAAAGTCATTCAAGAAGTCT
Protein: 287 (aa)
MDNLMSPYSNLSMGTTTPLHHPDEDLANFQHQQQNNVYLPKQMNFAPPHAPPPLMMTQPSTPHSHFIPMTPQQQPPSVSEAPPSSIPKVNTPAIDASPMFNPMTPLDSSILPQLQNIVSTVNLNCKLDLKKIALHARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEDDSRLAARKYARIIQKLGFNAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHGKFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKVRQEIYDAFDNIFPILKSFKKS
| Type | Start | End | Length |
| CDS |
32533 |
32718 |
186 |
| CDS |
32785 |
33326 |
542 |
| CDS |
33392 |
33524 |
133 |
| intron |
32719 |
32784 |
66 |
| intron |
33327 |
33391 |
65 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001662432 |
tata-box binding protein [Aedes aegypti] gb|EAT35515.1| tata-box binding protein [Aedes aegypti] |
1e-104 |
| InterPro |
IPR000814 |
TATA-box binding protein |
|
| InterPro |
IPR012295 |
Beta2-adaptin/TBP, C-terminal domain |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(BP) |
GO:0006367 |
transcription initiation from RNA polymerase II promoter |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Pfam |
PF11858.3 |
Domain of unknown function (DUF3378) |
0.00026 |
| Pfam |
PF00352.16 |
Transcription factor TFIID (or TATA-binding protein, TBP) |
2.8e-68 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000014767 |
| T. castaneum |
TC008403 |
| P. humanus |
PHUM533080-PA |
| D. melanogaster |
FBgn0003687 |
| A. aegypti |
AAEL012330 |
| H. sapiens |
ENSP00000375942 |
| S. invicta |
SI2.2.0_10030 |
| C. quinquefasciatus |
CPIJ007600 |
| M. musculus |
ENSMUSG00000061809 |
| C. quinquefasciatus |
CPIJ018368 |
| A. gambiae |
AGAP010958 |
| H. sapiens |
ENSP00000247219 |
| P. vanderplanki |
Pv.05121 |
| D. plexippus |
DPOGS213670PA |
| B. mori |
BGIBMGA010619-TA |
| H. sapiens |
ENSP00000442132 |
| H. melpomene |
HMEL016424-PA |
| H. sapiens |
ENSP00000230354 |
| A. mellifera |
GB17946-PA |