MidgeBase gene description page [Pn.09651]
Outline
| Gene ID | Pn.09651 |
| Type | Protein coding gene |
| Scaffold | PnScaf10017 |
| Start | 12411 |
| End | 18686 |
| Direction | + |
Sequence
Transcript: 2130 (bp)
ATGTTTGGTGGTGCCGATAAGAAATCAGGCGGCGTATCGAATTGGTTCTTCTCACTTCGAAGACAGCCGAAGAAGCAGAAGTCGCTAGACAGCAGTAAGCTTCTGCAGAAGAGCTGCGTGGATCTGACCAGCGCTGGCGTGAATGGCGGATCCTCGGAACAAGACTTACTATTTCGCACAAAGCCTTCCAAGTTGAAACTAAATAACAATAGTAGCAATAATAACAATAATAATAACGACGATTTATCGTCAACTAGTAATTCATGTACAAATTGTTGTTGTAAATTCTCATCGAAAACCTCATCTCCATCGTTCGGCGTGTCTCCCATCGACGACATTGAGCAATGTGATCAATTGCGTAGAGTGCTAATTACCAGCGAGGAAAATTACTGTGCAACTGAATGCCACGAGCCAGACTATGATGATGTCGATATCGAGGACGATGATGACTTCAGCAATATCAGCCAAAAGCCACCGCCACTGCAGACCAATAAGCCGAAAACAGCAAACACAACAAACAATTTTAATAGTAACATTTTATTGTATAATAAGAAAGAGGAATTTAGTCGGACAACGCGAACGGTGACAACGAGAGTTATTACGAAAGCCTCAATTAACGGCGGTGACACAACGGCAGCAACGACAACCATTGCAGCAACCCTACCGTTGTCAACGACGCCATCATCGACGAGTAGTGGGAGCCGCAATCAAAATAGTAATATTCATCATCGCATCGGCTTAGTGTTTAACGAGAATGGGCAATTAATCAATAGGCGACAATTACTCAACGCCAAAAACCGTGATGGTCTAATATTTGATGAGTGCGGGCGACTGCTGTATACGACAGAAAACGATGAAACCTCGTCCTCGCTCACGCCCATTTCAATATTAGACGATAGTACAATTGAGTTTATAGATAGTTCTACCCAAAACAGTGATATACAGAACCGAGCAAATATGCAGAATAAGTGTAATAATTGTAATGGTAGCAAATTGACATTAAGTAGCAGCATACTGTCAAGTTGTAAATCAGATTGGGACTTTTCAAAGCAGCAAATTAAGGATGAGCTTAGTGAAGTTGTTCAGGAGATGGAGTCACACGAGTCCGAGAGCAAGCATTCCAGCAAGGAGAAACAAATGTCGATAGGACGGAAAAAGTTTAATATGGACCCCAAGAAAGGTATTGAATATCTCTACGAGAATCATCTGCTCAAGCACGATCCGCAAGATGTGGCGCAATTCCTTTACAAGGGCGAAGGATTAAATAAAACAGCAATCGGTGACTATCTGGGCGAGAAGAATCCGTTTAATGAAAAAGTTTTGAAAGCTTTCGTCGAGCTTCATGACTTTACGAATCTCATACTCGTGCAAGCTTTAAGACAATTTTTATGGAGCTTTCGACTGCCGGGTGAGGCTCAGAAAATTGATAGGATGATGGAATGCTTTGCGCAGCGTTACTGTCAATTAAATCCTGACATTTTTACATCCGCCGATACAGCGTACATCTTGAGTTTCGCAATTATCATGCTAAACACATCCCTACATAATCCATCAGTAAAAGACAAGCCGACGGTTGAGCAGTTTATTTCAATGAATCGAGGCGTGAATAATGGCGACGACTTACCGCGCGAGCTTTTGGAATCGCTTTACGAGTCAATAAGGACTGAGCCATTCAAAATTCCGCAAGACGACGGCAATGATTTAATGCACACGTTTTTCAACCCCGATAAGGAAGGCTGGCTGTGGAAGCAGGGCGGTCGCTACAAGTCGTGGAAGAGACGATGGTTTATTCTTAACGATAATTGTCTATACTACTTTGAGTTTACAACCGATAAGGAACCGCGAGGTATAATACCGTTGGAAAATATTATGGTTCGCGAGTGCAAGGCCACGGATAAGAGTAAGCCTCATTGCTTTGAATTGTATGCTTCAGGTGGTGCGGAGATTATAAAAGCATGCAAAACGGATTCGGAGGGCAAGGTCGTTGAGGGTAAACACACGGTCTACAGAATGTCGGCGTCAACTGAAGAGGAGAAGAACGATTGGATAAGGCTTTTGAAACACTCGATAGCCCACAATCCATTCTATGATATTTTGGTACAAAGAAAGAAGAAGGCGCTAGTTAAAAGT
Protein: 710 (aa)
MFGGADKKSGGVSNWFFSLRRQPKKQKSLDSSKLLQKSCVDLTSAGVNGGSSEQDLLFRTKPSKLKLNNNSSNNNNNNNDDLSSTSNSCTNCCCKFSSKTSSPSFGVSPIDDIEQCDQLRRVLITSEENYCATECHEPDYDDVDIEDDDDFSNISQKPPPLQTNKPKTANTTNNFNSNILLYNKKEEFSRTTRTVTTRVITKASINGGDTTAATTTIAATLPLSTTPSSTSSGSRNQNSNIHHRIGLVFNENGQLINRRQLLNAKNRDGLIFDECGRLLYTTENDETSSSLTPISILDDSTIEFIDSSTQNSDIQNRANMQNKCNNCNGSKLTLSSSILSSCKSDWDFSKQQIKDELSEVVQEMESHESESKHSSKEKQMSIGRKKFNMDPKKGIEYLYENHLLKHDPQDVAQFLYKGEGLNKTAIGDYLGEKNPFNEKVLKAFVELHDFTNLILVQALRQFLWSFRLPGEAQKIDRMMECFAQRYCQLNPDIFTSADTAYILSFAIIMLNTSLHNPSVKDKPTVEQFISMNRGVNNGDDLPRELLESLYESIRTEPFKIPQDDGNDLMHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDNCLYYFEFTTDKEPRGIIPLENIMVRECKATDKSKPHCFELYASGGAEIIKACKTDSEGKVVEGKHTVYRMSASTEEEKNDWIRLLKHSIAHNPFYDILVQRKKKALVKS
| Type | Start | End | Length |
| CDS |
12411 |
13463 |
1053 |
| CDS |
15713 |
15839 |
127 |
| CDS |
16245 |
16343 |
99 |
| CDS |
16465 |
16564 |
100 |
| CDS |
17660 |
17880 |
221 |
| CDS |
17980 |
18251 |
272 |
| CDS |
18331 |
18438 |
108 |
| CDS |
18534 |
18683 |
150 |
| intron |
13464 |
15712 |
2249 |
| intron |
15840 |
16244 |
405 |
| intron |
16344 |
16464 |
121 |
| intron |
16565 |
17659 |
1095 |
| intron |
17881 |
17979 |
99 |
| intron |
18252 |
18330 |
79 |
| intron |
18439 |
18533 |
95 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001661955 |
cytohesin 1, 2, 3, 4 (guanine nucleotide-exchange protein) [Aedes aegypti] gb|EAT46141.1| cytohesin 1, 2, 3, 4 (guanine nucleotide-exchange protein) [Aedes aegypti] |
0.0 |
| InterPro |
IPR023394 |
SEC7-like, alpha orthogonal bundle |
|
| InterPro |
IPR011993 |
Pleckstrin homology-like domain |
|
| InterPro |
IPR000904 |
SEC7-like |
|
| InterPro |
IPR001849 |
Pleckstrin homology domain |
|
| Gene Ontology(BP) |
GO:0032012 |
regulation of ARF protein signal transduction |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0005086 |
ARF guanyl-nucleotide exchange factor activity |
|
| Gene Ontology(MF) |
GO:0005543 |
phospholipid binding |
|
| Pfam |
PF01369.15 |
Sec7 domain |
4.8e-70 |
| Pfam |
PF00169.24 |
PH domain |
8.7e-22 |
| Pfam |
PF04592.9 |
Selenoprotein P, N terminal region |
0.0047 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000017132 |
| H. sapiens |
ENSP00000408236 |
| A. gambiae |
AGAP008737 |
| M. musculus |
ENSMUSG00000018008 |
| A. mellifera |
GB16727-PA |
| P. humanus |
PHUM591140-PA |
| A. mellifera |
GB14581-PA |
| C. quinquefasciatus |
CPIJ001599 |
| H. sapiens |
ENSP00000297044 |
| H. sapiens |
ENSP00000248901 |
| H. sapiens |
ENSP00000467052 |
| H. sapiens |
ENSP00000389095 |
| D. plexippus |
DPOGS203250PA |
| H. sapiens |
ENSP00000465665 |
| M. musculus |
ENSMUSG00000003269 |
| H. sapiens |
ENSP00000379967 |
| H. sapiens |
ENSP00000391648 |
| H. sapiens |
ENSP00000354398 |
| S. invicta |
SI2.2.0_00406 |
| B. mori |
BGIBMGA007032-TA |
| H. sapiens |
ENSP00000375753 |
| C. quinquefasciatus |
CPIJ001600 |
| H. sapiens |
ENSP00000465940 |
| P. vanderplanki |
Pv.05116 |
| H. sapiens |
ENSP00000466512 |
| H. melpomene |
HMEL005830-PA |
| M. musculus |
ENSMUSG00000018001 |
| T. castaneum |
TC005815 |
| A. aegypti |
AAEL002646 |
| D. melanogaster |
FBgn0086779 |
| N. vitripennis |
NV17534-PA |