MidgeBase gene description page [Pn.09640]
Outline
| Gene ID | Pn.09640 |
| Type | Protein coding gene |
| Scaffold | PnScaf9988 |
| Start | 29443 |
| End | 42264 |
| Direction | + |
Sequence
Transcript: 4614 (bp)
ATGGAGAAGCTGATGGATTTACCGAAAGGAGCGAAAATTACGCACACCGGCCTGCTGCAGCACAATGCAGACGGCACCACGGACATTCAGAAGATCACGCAAGCCGGACTGGTGGCGCGCTCACCCGAAGGAACCGCCGCCAAAGGCATGAACATCCGCGGCAACGAGGACTTGTGGGTGGAGATTCAGGCAAATACATTTAGGAACTGGGTCAATGAGCATCTCCGTGATGTCGGCATGCAAGTGACGGATTTGTCTGTCGACTTTTGCGATGGCACGCACCTCTGCGCGCTGGTCGAGTCGCTGCAGAAGCGAAAACTGAAGCCGTCGTGGAACAAGAGGCCGCAGAACCAGCACCACTACCTCGAAAATGCCACGACCGCGCTAAATGCCATCGAAGCCGATCACATCAAGCTGGTGAACATTGGCAACGTCGACATCGTCAACGGCAATCTCAAACTCATTCTCGGCCTCATCTGGTCGCTAATTGTGCGCTACCAGATCGGTCGCAGCAAGTTCCCGCCGAGGAAGCTCATGCTCGCGTGGCTGCAGGCCGCACTGCCCGAGTGCCGCGTCACCAATCTCACGAGCGACTGGAACAGCGGCGTGCTGCTCTCGGCGCTGCTCGAGTACTGCGAGCCGGGTCTTTTCCCACACTGGCGCTCGCTCGACCCCAACCAGTCGGTGCGCAACTGCGAGAACGCAATGAACATCGCGCACCGAACGTTCGGCGTGCCGAAAGTCCTCGAACCCGAGTACCTCGCGTCGCCGTGGCTGGACGAGCTGTCCGGTATGACGTACTTGTCTTACTTCATGAAACCTGATGGTCCAGGGTACAATGCATCCATGCGATGGGTCAATAGTCAAATCAAAGTGCCAGTTCACAACTTCACGTCCGACTGGAACGACGGTCGAGTATTTTGCGAGATTATAAAGGGACTCGGTGGAAACGCGCCGGCGCCGGAGAAAGTCAGCCGCGACCCGGCCATGTGGGAGAGCAACATGAAGAAGGCCGTGGACGCGGGCAACCGTTTCGGCATCAAACCCGTCCTCTCGCCAAAGGAGATGACGAGCCCGGAGGTCGAGCATCTCGCCATCATGGCCTACGCCACGCACATGCAGTGGATTACGCCGCGCCCGCCTCTCGCCGACATGGTCGCCGTCCACTTGCAGAGCACGAGCGGCCGCGTAGCGGAGCCGACACACTTCCGCATCGACGTCCTCTCGAAAGACGTCGACCCGGCGCGCATGAAGGTCTACGTGGTGGCGCCACACGACAAAGGCGTCGCGACCCTGATCACGCTCAACAAGCACGGCGAGGGCACGTTCATCCCGGAGATCTACGGAATGCACGAGATCCTCATCGAGATCGGCGACGATCGGCTGGGCGGGCACTTCTTCCGCGTCATGCCGCGCTTCATGCAGGTGAAACCGCCGGGCATGGCGCCGTGCGCGCTCGGCAGCCTGGTCGAGGTTCTCGTGAACGCGACCGGCGCGCCGCGCTCCGAGGACATCCTCGTGACGGCGTACTCGCCGTCGGGCCGTCCCCTCAAGTGTCCGCTGAAGAAGGTCGACGAGGGACACAGTGCCATATTCAAGCCCGACGAGGCCGGCGTGTGGGAGATCGCGATCACCTACCAGGGCCACCACATCCAGGGAAGTCCCTACACGTGCGCCGTCTTCGACCCGAGCGGCGTCTCCGTGCACGGCCTCGACGGCGCCATGCCGTTCAAGGCGCACGCCTTCGAAATCGACGCGCGCGGCGTCGGCGTCGCCGGCGAGCTGCACGTCGACATCGTCTGCGAGAAGCGGTCGGTGGTGTGCGCGGTGGAGAAGCTGGTCGAGAACAAGTACCGCGTGACGTTCATGCCGCGCCAGAACGGCAAACACCGGGTGTACATCTACTTCAACGGCTACGACGTGCGCGGATCGCCTTTTATTATGCGCGTCGGGACGAAGGGGCGCTCGGGCAAGACGCGCAGCAGTCCGAGCCACGAGAGCTCGCGCTACCGCTCCGAAAGCCCCTCGATGCACTTCAACACCTCGATGCTGAAGAACGAGAGCTCGAGCGTGCGCCGCGAACTCTACTCGCCTCAGAACGTGCCGAAAGCGGGCTCCTACTCGCCGCAGCTGTCGCCCTCGTTCGACGACCGCTACGAGATCAAGACGAGCAAGGAGGTGTATGCGTCGCCCCGGCTGACGTCGCCGACGCGCATCGGCTCGCCCGGTCGCGACCTCTACAGTCCGAAATTGGTGGACGAGCAGCAGCACCACGGCTACTCGACCGTCTACAAGAGCGAATTCAAGAAGGAGATCCGAAAGAGTCAAAGTCCGTCGCTCGACTACGGAAGCCGCGACACGACCGACTTTTACGGCAAGAAAAACGTCTCGAAGACGAATCTGACGAAGGACGAGGGACTTTACAGCTCGTCCTTCTATTCGAAGCTCAAGAACGACAGCAGCTTCGCGAGGAAGACCGACTCGCCTACTTTGATGTCGAGCCCGATCAATATGCGCGCGAGTCCAGTGGTGCGCAGTCCGCTGACGGTGACGACGTCGTTCGAGCGGCGAGCAGCTAGTCCGCGAAACTTCGCGTCGTCGCCGTCGCCGCGGTTGACGAGCGAGTCGCCCGTTCGCACGCTCCTCAACACATCGACGACGACAGCTGCCTCGAATTCGGCATCGAAGGTGAACTCGGAAACTTATCGCGTCACGCAGCACACGTACCGGTCGACGGTGAATCAGGGCGCGAGTCCAGTGCCGCCGTTCAAGACCGCCATAACGGACGGCGTCGACTACTCGTCGAACATCTCGCCGCTGAAGCCGGCGGCCGGCCGTCGCGACAGCTGGGACGTCCTCAACAAGACCAAGCACATGTTCTCGAACAACTCGCTCGAGTCGCTGGCGAAGCTGACGGAGGAGCAGCTGGACACGAACCTGTCGTTCGATCGCTCGGCTGTCGACACCGAAACGCACACGAACACGCAGTTCAACAAGTTCTCGCTCGCGGACTCCTCGTACAAGGAGCGCAACGAGAAGTATGTGACCAAAACGAGCGCTCACAATGACTACGGATACACTTCGAAATTTCTGCCGATCGACGATCACGGACTGGAGGGCGCGAAGGCCATCAAAGTCTCCAACAAGCCCGACGGCTTCCTCGGGCAGCCCTTCGAGTTCGAGATCGATGGCTCGCGAGCTGGATCGGGAAACTTGGAGATTCTCGTCAATGGCGGTCGCGTGACGTCGTCAGTGCGAGCACTTGGCAGTCAGCGATTTGTGGCGAGCTTCACTCCGCACGAAACTGGCATTCACACCGTTCAGATCACGTTTAATGGCGAAACCGTACCCGGATCACCCTGGCACATCGACATAATGCCCTCATCACCCGGAATCACTGCATTGGGCGAGTCGACTCGCCTCGTCGCCGCCAATCAGCCGGCGGTTTTTGAGATTCTGCCGCCTCCTGGCACGTCCCTGCGGACATCTGATTGTGTCGCGACGGTGCTCTCGCCTAGCAAGAGCAAAGTCAACGCACGAATCACCAACGAGGCGGCAAGTGCAACTGGTGCCATGCGAATAGAATTCACACCGCTCGAGGTCGGAACGCACATCATCGAGGCGTCCATCAACGGCACGAAGATCGTCGGTGGGCCGCTGATCGCGAAAGTCTACGACTCGAGTCTCATTCAGGTGACGGACGTGAATAGCGGCATCGTGGGGCAGGCTTGCCAATTTCGGGTGGACGCGTCGGCCGCCGGCGAGGGTCAACTCGAAATCTCCATCAACGACGGCGAGGTGCCGAATCACGTGCAGGTCGTCGGCGGCGGCCGATGTCTCGTCTCGTTCACGCCCGAACAGGCGAAGCCGCACTTGATCGACATCAAATTCAACGGCGAAACGGTGCGCGGATGCCCGTTCATTTGCTCCGTCGCCGACACGAGTCGCGTCACCTTGAATCTGTCGAATCTCGAGCTCGTTCCCGTCAATCATCCCGCGACATTTTTAATCACCGTTAATGGCGGCGGAGCGGCAGAGCTGGCAGTGAGCGTGCGAAGCACTCAGGGTGAGCTGCCTGTGCGCGTAACAGGCAACATCCACTCGGGCTTCACGGCCGAATTCACGCCGGTCAACGTCGGTGCACACACGATCAACGTCGACTACAACGGCTATCCCGTGCACGGAACGCCGTTCGTTTCGAAGTCCTACGACGCGAGAAGAGTGCAGGTCGGAGCGGTAACAAAGGGCTCGGTGGGTCGGGCTGTGCAATTCACGGTCGACGCCCACGAGGCCGGCGAGGGTAACTTGGAAATCACGATTTCGGCCAAGGGACACAACATTCCGACGCAGGTTCATCCGCAAGGAAATGCCAAATTTTTAGTGTCGTTTGTGCCGGCCGAGGCATGCGAGCATGTCATTAATGTGTCATTCAACAAAATGCCAGTGCCTGGCTGTCCCATCAATGTACAAGTGAGCGGCAATGCGTCGGGCCCGCAGGTTTCGCTAAACGGACCCGGCCCCGTTCACGTGCCCAACTCCCTCGTCATCAACCACGTCGGCGGACGATTGGACGACGTAGAAGTCAACGTAGAAGGACGACGAAGACTTTTATAC
Protein: 1538 (aa)
MEKLMDLPKGAKITHTGLLQHNADGTTDIQKITQAGLVARSPEGTAAKGMNIRGNEDLWVEIQANTFRNWVNEHLRDVGMQVTDLSVDFCDGTHLCALVESLQKRKLKPSWNKRPQNQHHYLENATTALNAIEADHIKLVNIGNVDIVNGNLKLILGLIWSLIVRYQIGRSKFPPRKLMLAWLQAALPECRVTNLTSDWNSGVLLSALLEYCEPGLFPHWRSLDPNQSVRNCENAMNIAHRTFGVPKVLEPEYLASPWLDELSGMTYLSYFMKPDGPGYNASMRWVNSQIKVPVHNFTSDWNDGRVFCEIIKGLGGNAPAPEKVSRDPAMWESNMKKAVDAGNRFGIKPVLSPKEMTSPEVEHLAIMAYATHMQWITPRPPLADMVAVHLQSTSGRVAEPTHFRIDVLSKDVDPARMKVYVVAPHDKGVATLITLNKHGEGTFIPEIYGMHEILIEIGDDRLGGHFFRVMPRFMQVKPPGMAPCALGSLVEVLVNATGAPRSEDILVTAYSPSGRPLKCPLKKVDEGHSAIFKPDEAGVWEIAITYQGHHIQGSPYTCAVFDPSGVSVHGLDGAMPFKAHAFEIDARGVGVAGELHVDIVCEKRSVVCAVEKLVENKYRVTFMPRQNGKHRVYIYFNGYDVRGSPFIMRVGTKGRSGKTRSSPSHESSRYRSESPSMHFNTSMLKNESSSVRRELYSPQNVPKAGSYSPQLSPSFDDRYEIKTSKEVYASPRLTSPTRIGSPGRDLYSPKLVDEQQHHGYSTVYKSEFKKEIRKSQSPSLDYGSRDTTDFYGKKNVSKTNLTKDEGLYSSSFYSKLKNDSSFARKTDSPTLMSSPINMRASPVVRSPLTVTTSFERRAASPRNFASSPSPRLTSESPVRTLLNTSTTTAASNSASKVNSETYRVTQHTYRSTVNQGASPVPPFKTAITDGVDYSSNISPLKPAAGRRDSWDVLNKTKHMFSNNSLESLAKLTEEQLDTNLSFDRSAVDTETHTNTQFNKFSLADSSYKERNEKYVTKTSAHNDYGYTSKFLPIDDHGLEGAKAIKVSNKPDGFLGQPFEFEIDGSRAGSGNLEILVNGGRVTSSVRALGSQRFVASFTPHETGIHTVQITFNGETVPGSPWHIDIMPSSPGITALGESTRLVAANQPAVFEILPPPGTSLRTSDCVATVLSPSKSKVNARITNEAASATGAMRIEFTPLEVGTHIIEASINGTKIVGGPLIAKVYDSSLIQVTDVNSGIVGQACQFRVDASAAGEGQLEISINDGEVPNHVQVVGGGRCLVSFTPEQAKPHLIDIKFNGETVRGCPFICSVADTSRVTLNLSNLELVPVNHPATFLITVNGGGAAELAVSVRSTQGELPVRVTGNIHSGFTAEFTPVNVGAHTINVDYNGYPVHGTPFVSKSYDARRVQVGAVTKGSVGRAVQFTVDAHEAGEGNLEITISAKGHNIPTQVHPQGNAKFLVSFVPAEACEHVINVSFNKMPVPGCPINVQVSGNASGPQVSLNGPGPVHVPNSLVINHVGGRLDDVEVNVEGRRRLLY
| Type | Start | End | Length |
| CDS |
29443 |
29685 |
243 |
| CDS |
30282 |
30681 |
400 |
| CDS |
30772 |
31022 |
251 |
| CDS |
31302 |
32918 |
1617 |
| CDS |
33011 |
33683 |
673 |
| CDS |
33745 |
33912 |
168 |
| CDS |
40167 |
40828 |
662 |
| CDS |
40890 |
41057 |
168 |
| CDS |
41117 |
41307 |
191 |
| CDS |
41380 |
41600 |
221 |
| CDS |
42242 |
42261 |
20 |
| intron |
29686 |
30281 |
596 |
| intron |
30682 |
30771 |
90 |
| intron |
31023 |
31301 |
279 |
| intron |
32919 |
33010 |
92 |
| intron |
33684 |
33744 |
61 |
| intron |
33913 |
40166 |
6254 |
| intron |
40829 |
40889 |
61 |
| intron |
41058 |
41116 |
59 |
| intron |
41308 |
41379 |
72 |
| intron |
41601 |
42241 |
641 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_308766 |
AGAP007006-PA [Anopheles gambiae str. PEST] gb|EAA04688.4| AGAP007006-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR001589 |
Actinin-type, actin-binding, conserved site |
|
| InterPro |
IPR013783 |
Immunoglobulin-like fold |
|
| InterPro |
IPR001298 |
Filamin/ABP280 repeat |
|
| InterPro |
IPR014756 |
Immunoglobulin E-set |
|
| InterPro |
IPR001715 |
Calponin homology domain |
|
| InterPro |
IPR017868 |
Filamin/ABP280 repeat-like |
|
| Gene Ontology(MF) |
GO:0003779 |
actin binding |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00307.26 |
Calponin homology (CH) domain |
4.7e-42 |
| Pfam |
PF00630.14 |
Filamin/ABP280 repeat |
1.2e-63 |
| Pfam |
PF11971.3 |
CAMSAP CH domain |
1.8e-11 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA007590-TA |
| C. quinquefasciatus |
CPIJ006589 |
| C. quinquefasciatus |
CPIJ006590 |
| C. quinquefasciatus |
CPIJ006592 |
| A. aegypti |
AAEL014591 |
| N. vitripennis |
NV18465-PA |
| S. invicta |
SI2.2.0_08035 |
| S. invicta |
SI2.2.0_00899 |
| P. humanus |
PHUM076810-PA |
| P. vanderplanki |
Pv.09606 |
| A. aegypti |
AAEL015058 |
| D. plexippus |
DPOGS203067PA |
| P. vanderplanki |
Pv.09607 |
| A. mellifera |
GB17792-PA |
| S. invicta |
SI2.2.0_02171 |
| A. gambiae |
AGAP007006 |
| D. melanogaster |
FBgn0028371 |
| P. vanderplanki |
Pv.09605 |
| A. aegypti |
AAEL015057 |
| T. castaneum |
TC002723 |
| H. melpomene |
HMEL004312-PA |
| A. aegypti |
AAEL010215 |