MidgeBase gene description page [Pn.09573]
Outline
| Gene ID | Pn.09573 |
| Type | Protein coding gene |
| Scaffold | PnScaf9871 |
| Start | 5410 |
| End | 6725 |
| Direction | - |
Sequence
Transcript: 900 (bp)
ATGGCATTGAATCTTGCTCGCTCGCATCCCCTTCCGAACGATGATGTCGTGCCGAACACTCCGGAAAATCTTGAGCGCCTGAAGCACCTCCGTCCCGATGACTTGGCCGAGGAGTTGAGTGGACAATTCGAGGGTGATATCGTCATCTCGCCGCAAGAAATAGAGCAGCTGCTCGGAACTGGCAGAAACGGTCGCACGGGACTGATTAACGAAAGATTCCGCTGGGCCAACAACATCATTCCCTATCAGATTCGCGAGGCTGACTTCACTTCTGCACAAATTCATTACATTCATGTGGCGGTTGAGAGAATCATGGAGGTGACGTGTCTGAAGTTTGTGCCCTACCAAGCGGACATCCATACCAACTACATCTGGATCACTGGCGAGAACAGCGGCTGCTGGTCGTACGTCGGAATGCGCGGCGGTCGTCAGCAGCTGAATCTGCAGACATTCCAGCCGGAGGTCGGCTGCTTCCGCCTCTTCACAATCGTGCACGAGTTCATGCACGCACTCGGCTTCTACCACATGCAGAGCGCGACCGAGCGCGACGAGTACGTCCGCATCGTGTGGGAGAACATCCAGAACGGAACGCAAAACAATTTCAACACTTACTCGGCCGATGTCATCACTCAGTTCGGCATCGACTACGACTACGGCTCGGTCATGCACTACTCAAAGACGGCCTTCTCTATCAACGGCGAGGATACGATTGTCGCGATCCGACCGCTCGGCGACGCCATCATGGGTCAGCGTGTGAGGATGAGTGACAAAGACGTCGCCCGAATCAACGCCATGTATTGCCCGAGGAACGTCCGACCGCCACCGCAGTCGCTTGCCGAATTTTTCTATCGCATCAATAGCGGCGTCAACAAGCTCTTCTACAACATTTTCTCGCGCTTT
Protein: 300 (aa)
MALNLARSHPLPNDDVVPNTPENLERLKHLRPDDLAEELSGQFEGDIVISPQEIEQLLGTGRNGRTGLINERFRWANNIIPYQIREADFTSAQIHYIHVAVERIMEVTCLKFVPYQADIHTNYIWITGENSGCWSYVGMRGGRQQLNLQTFQPEVGCFRLFTIVHEFMHALGFYHMQSATERDEYVRIVWENIQNGTQNNFNTYSADVITQFGIDYDYGSVMHYSKTAFSINGEDTIVAIRPLGDAIMGQRVRMSDKDVARINAMYCPRNVRPPPQSLAEFFYRINSGVNKLFYNIFSRF
| Type | Start | End | Length |
| CDS |
5413 |
5931 |
519 |
| CDS |
6054 |
6166 |
113 |
| CDS |
6228 |
6425 |
198 |
| CDS |
6656 |
6725 |
70 |
| intron |
5932 |
6053 |
122 |
| intron |
6167 |
6227 |
61 |
| intron |
6426 |
6655 |
230 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_318543 |
AGAP010764-PA [Anopheles gambiae str. PEST] gb|EAA13734.4| AGAP010764-PA [Anopheles gambiae str. PEST] |
2e-74 |
| InterPro |
IPR024079 |
Metallopeptidase, catalytic domain |
|
| InterPro |
IPR001506 |
Peptidase M12A, astacin |
|
| InterPro |
IPR006026 |
Peptidase, metallopeptidase |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0004222 |
metalloendopeptidase activity |
|
| Gene Ontology(MF) |
GO:0008237 |
metallopeptidase activity |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Pfam |
PF11667.3 |
Protein of unknown function (DUF3267) |
0.1 |
| Pfam |
PF00413.19 |
Matrixin |
0.014 |
| Pfam |
PF01400.19 |
Astacin (Peptidase family M12A) |
6e-57 |
| Pfam |
PF02130.12 |
Uncharacterized protein family UPF0054 |
0.059 |
| Pfam |
PF11350.3 |
Protein of unknown function (DUF3152) |
0.026 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL015078-PA |
| D. plexippus |
DPOGS213158PA |
| D. melanogaster |
FBgn0028949 |
| C. quinquefasciatus |
CPIJ002943 |
| A. aegypti |
AAEL011550 |
| B. mori |
BGIBMGA007916-TA |
| B. mori |
BGIBMGA007915-TA |
| A. aegypti |
AAEL013449 |
| A. aegypti |
AAEL011555 |
| P. vanderplanki |
Pv.04827 |
| D. melanogaster |
FBgn0028950 |
| A. aegypti |
AAEL011547 |
| D. melanogaster |
FBgn0028945 |
| H. melpomene |
HMEL010316-PA |
| P. vanderplanki |
Pv.04826 |
| D. melanogaster |
FBgn0028948 |
| A. aegypti |
AAEL011558 |
| A. gambiae |
AGAP010764 |
| A. aegypti |
AAEL014514 |
| C. quinquefasciatus |
CPIJ002942 |
| C. quinquefasciatus |
CPIJ002941 |