MidgeBase gene description page [Pn.09572]
Outline
| Gene ID | Pn.09572 |
| Type | Protein coding gene |
| Scaffold | PnScaf9871 |
| Start | 3383 |
| End | 4842 |
| Direction | - |
Sequence
Transcript: 825 (bp)
ATGACTCAGAAAAATCAGCACTCGAACGTACGTACACAAATTGATGAAACTTTCAAGAAAATAAATAAATTAAAGTCAAATTTTCTCACGACAGTACAGCGATTAGAAAATTTAAAAGCAGACGAACTGGCGGAGGAGTTGAGTGGCCAGTTTGAAGGTGACATCGTGATTTCTCAAGAGCAGCTTAACGAACTCCTCGAGCGCGACACAAAGACGGGCGTGCGCGACTCCAAGTACCATTGGCCCAACAGGCTCGTGCCATACCGAATTAAACGTAAAGACTTCACCGAAGCTCAGCTCCAACAGATAGAAGACGGTTTGAGAACCCTCGAGAACGTAACGTGCATAAAATTTGTAGAGTATCAACCGGATGCTCATACTAATTACATTTGGGTTACCGGCGAAGACGGCGGCTGCTGGTCGAATGTCGGCATGCAGGGCGGTCGCCAGCAATTGAATTTGAAGCCATACGCTGTAGGCTCGGGTTGTTTTCGTCTCTACACAATCGTGCACGAGTTCATTCACGCCTTGGGCTTCCATCACATGCAGAGCGCAGCAAATCGAGATAAGTTCGTTCGTATCGAGTGGAGCAACATCGAACGGGGAAAGGAAAGCAACTTCAAAGCCTACTCGACGAAAAAAGTTGACATGTTTGGTGCGCCATACGACTACGGATCGGTGATGCACTACTCGGACAGAGCTTTCTCGTTCAATGGTAACAAAACGATAATTCCGCTGCGAAGTCTCGACGAGGGCGAAGTTCTGGGTCAGCGAGTTCGAATGAGCCGCCATGACATCGACCGCATCAACGCCATGTATTGCAAA
Protein: 275 (aa)
MTQKNQHSNVRTQIDETFKKINKLKSNFLTTVQRLENLKADELAEELSGQFEGDIVISQEQLNELLERDTKTGVRDSKYHWPNRLVPYRIKRKDFTEAQLQQIEDGLRTLENVTCIKFVEYQPDAHTNYIWVTGEDGGCWSNVGMQGGRQQLNLKPYAVGSGCFRLYTIVHEFIHALGFHHMQSAANRDKFVRIEWSNIERGKESNFKAYSTKKVDMFGAPYDYGSVMHYSDRAFSFNGNKTIIPLRSLDEGEVLGQRVRMSRHDIDRINAMYCK
| Type | Start | End | Length |
| CDS |
3386 |
3811 |
426 |
| CDS |
3873 |
3985 |
113 |
| CDS |
4163 |
4410 |
248 |
| CDS |
4805 |
4842 |
38 |
| intron |
3812 |
3872 |
61 |
| intron |
3986 |
4162 |
177 |
| intron |
4411 |
4804 |
394 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_318543 |
AGAP010764-PA [Anopheles gambiae str. PEST] gb|EAA13734.4| AGAP010764-PA [Anopheles gambiae str. PEST] |
1e-68 |
| InterPro |
IPR024079 |
Metallopeptidase, catalytic domain |
|
| InterPro |
IPR001506 |
Peptidase M12A, astacin |
|
| InterPro |
IPR006026 |
Peptidase, metallopeptidase |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0004222 |
metalloendopeptidase activity |
|
| Gene Ontology(MF) |
GO:0008237 |
metallopeptidase activity |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Pfam |
PF00413.19 |
Matrixin |
0.0029 |
| Pfam |
PF01400.19 |
Astacin (Peptidase family M12A) |
7.1e-57 |
| Pfam |
PF01123.15 |
Staphylococcal/Streptococcal toxin, OB-fold domain |
0.012 |
| Pfam |
PF02130.12 |
Uncharacterized protein family UPF0054 |
0.027 |
| Pfam |
PF11350.3 |
Protein of unknown function (DUF3152) |
0.064 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL015078-PA |
| D. plexippus |
DPOGS213158PA |
| D. melanogaster |
FBgn0028949 |
| C. quinquefasciatus |
CPIJ002943 |
| A. aegypti |
AAEL011550 |
| B. mori |
BGIBMGA007916-TA |
| B. mori |
BGIBMGA007915-TA |
| A. aegypti |
AAEL013449 |
| A. aegypti |
AAEL011555 |
| P. vanderplanki |
Pv.04827 |
| D. melanogaster |
FBgn0028950 |
| A. aegypti |
AAEL011547 |
| D. melanogaster |
FBgn0028945 |
| H. melpomene |
HMEL010316-PA |
| P. vanderplanki |
Pv.04826 |
| D. melanogaster |
FBgn0028948 |
| A. aegypti |
AAEL011558 |
| A. gambiae |
AGAP010764 |
| A. aegypti |
AAEL014514 |
| C. quinquefasciatus |
CPIJ002942 |
| C. quinquefasciatus |
CPIJ002941 |