MidgeBase gene description page [Pn.09549]
Outline
| Gene ID | Pn.09549 |
| Type | Protein coding gene |
| Scaffold | PnScaf9824 |
| Start | 6421 |
| End | 8314 |
| Direction | + |
Sequence
Transcript: 1533 (bp)
ATGTCGTCGGTGCATCCGGATGTGTACAAGCTGCAGGCGAAGATCGCCGATCTCACCATGTACGATCTTCTGCCGTTCAAGGAGCACGCGCACCACCCGACGCGCGAGTTCCTCCAGAAAATCGTCGACATCCTCCTCGACTACATCGAGCTGTGCAATGACCGCAACGAGCACGTACTCGAGTACCACTCGCCCGATAAGCTCAAAGAGCTGTTCAACATGGCGCTCCCGCACGACGGCCTCACGCTCCAGCACCTCATCACAGACTGCGCGACCGTCCTCAAGTACGGCGTGAAGACGGGCCATCCGCACTTTATGAACCAGCTGTCGTGCGGCCTCGACATCATCTCGATGGCGGGCGAGTGGCTCACCGCCACCGCCAACTGCAACATGTTCACCTACGAGATCTCGCCGGTGTTCATCATCATGGAGCATCAGGTGCTCAAGCGCATGCGCCGCATCATCGGCTGGCACACCGGCGACTCGATCATGGCGCCCGGCGGCACCATCAGCAACCTCTACGCCGTCATCGTCGCGCGCTTCAAGAAATTTCCCGAGTACAAGACCCAGGGACAGAAGGCACTGCCCGGCGAGCTCGTCATCTTCACCACCGACCAGGGACACTACTCGATGAAGATGGCCGCCATGGTGTGCGGTCTCGGCACCTCCAACTGCATCTACGTGCCGAGCGACAAGAACGGCCGCATGATCCCGAGCGAGCTCGAGCGACTCATTGTCGAGCAGAAGGAGCTCGGAAAGTTTCCGATCATGGTGAACGCTACTGCCGGCACGACCGTGCTTGGGGCGTTCGATCCTATCAATGACATCGCCGACATTTGCGAAAAGTACGATCTGTGGCTGCACATCGATGGCGCCTGGGGTGGTGGCGTCCTCCTTTCGCACAAGCACCGCGTAACCCGTTTCCGCGGCATCGAGCGCGCCCACTCGATGACATGGAACCCGCACAAGATCATGGGCGTGATCTTGCAATGCTCGACGTTCCACGTTCGCGAGAGCGAGCTGCTCGAGGAGTGCAACCGCATGACGGCCGAGTACCTGTTCATGACCGACAAGTTCTACGACACGCGCTACGACACCGGCGATCGTGTCATCCAGTGCGGCCGACACAACGACATCTTCAAGCTGTGGTTCACGTGGCGTGCACGCGGCGAGGCCGGGTTTGAGGCGCGCATCGATCGGCTGATGGAGTTGGCGCAATATCAGGTGAAGAGGATCAAGGAGATGCCCGACAAGTTCTACCTGGTCATGGAGCCGGAGTTTGTCAACGTGTGCTTCTGGTATATTCCCGAGAGATTCCGCCACATGCCGCACGGCCCCGAAAAGGAGGAGGAGCTCGCTCGCCTCTGCCCAATTATCAAGGAGCGCATGATGAAGGCCGGCACGCTGATGGTCGGCTACCAGCGCGACGGAAAAATTCCCAACTTCTTCCGCTCGATCATCTCGCAGGACGCCATTCAGGAAAAAGACATTGACTTTATGCTTCACGAAATCGACCGACTCGGCTACGACTTG
Protein: 511 (aa)
MSSVHPDVYKLQAKIADLTMYDLLPFKEHAHHPTREFLQKIVDILLDYIELCNDRNEHVLEYHSPDKLKELFNMALPHDGLTLQHLITDCATVLKYGVKTGHPHFMNQLSCGLDIISMAGEWLTATANCNMFTYEISPVFIIMEHQVLKRMRRIIGWHTGDSIMAPGGTISNLYAVIVARFKKFPEYKTQGQKALPGELVIFTTDQGHYSMKMAAMVCGLGTSNCIYVPSDKNGRMIPSELERLIVEQKELGKFPIMVNATAGTTVLGAFDPINDIADICEKYDLWLHIDGAWGGGVLLSHKHRVTRFRGIERAHSMTWNPHKIMGVILQCSTFHVRESELLEECNRMTAEYLFMTDKFYDTRYDTGDRVIQCGRHNDIFKLWFTWRARGEAGFEARIDRLMELAQYQVKRIKEMPDKFYLVMEPEFVNVCFWYIPERFRHMPHGPEKEEELARLCPIIKERMMKAGTLMVGYQRDGKIPNFFRSIISQDAIQEKDIDFMLHEIDRLGYDL
| Type | Start | End | Length |
| CDS |
6421 |
7290 |
870 |
| CDS |
7649 |
8311 |
663 |
| intron |
7291 |
7648 |
358 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_315894 |
AGAP005866-PA [Anopheles gambiae str. PEST] gb|EAA11955.3| AGAP005866-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR015424 |
Pyridoxal phosphate-dependent transferase, major domain |
|
| InterPro |
IPR002129 |
Pyridoxal phosphate-dependent decarboxylase |
|
| InterPro |
IPR021115 |
Pyridoxal-phosphate binding site |
|
| InterPro |
IPR015422 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 |
|
| InterPro |
IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
|
| Gene Ontology(BP) |
GO:0019752 |
carboxylic acid metabolic process |
|
| Gene Ontology(MF) |
GO:0016831 |
carboxy-lyase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0030170 |
pyridoxal phosphate binding |
|
| Pfam |
PF00282.14 |
Pyridoxal-dependent decarboxylase conserved domain |
1.4e-121 |
| Pfam |
PF01212.16 |
Beta-eliminating lyase |
5e-05 |
| Pfam |
PF00155.16 |
Aminotransferase class I and II |
0.0078 |
| Pfam |
PF00266.14 |
Aminotransferase class-V |
8.4e-06 |
| Pfam |
PF05889.8 |
Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) |
0.081 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.10144 |
| Pn.06396 |
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.01918 |
| H. sapiens |
ENSP00000282538 |
| D. plexippus |
DPOGS207306PA |
| H. melpomene |
HMEL008258-PA |
| P. humanus |
PHUM035540-PA |
| A. mellifera |
GB19979-PA |
| H. sapiens |
ENSP00000369179 |
| P. vanderplanki |
Pv.03275 |
| A. aegypti |
AAEL011981 |
| B. mori |
BGIBMGA012088-TA |
| A. gambiae |
AGAP005866 |
| D. melanogaster |
FBgn0000153 |
| B. mori |
BGIBMGA003219-TA |
| A. aegypti |
AAEL007542 |
| H. sapiens |
ENSP00000350928 |
| N. vitripennis |
NV12887-PA |
| S. invicta |
SI2.2.0_12450 |
| C. quinquefasciatus |
CPIJ018101 |
| H. sapiens |
ENSP00000427059 |
| P. humanus |
PHUM157900-PA |
| D. melanogaster |
FBgn0004516 |
| P. vanderplanki |
Pv.00659 |
| A. gambiae |
AGAP008904 |
| H. sapiens |
ENSP00000369172 |
| M. musculus |
ENSMUSG00000056880 |
| H. melpomene |
HMEL003159-PA |
| H. sapiens |
ENSP00000434696 |
| A. mellifera |
GB16827-PA |
| H. sapiens |
ENSP00000267085 |
| D. plexippus |
DPOGS214557PA |
| H. sapiens |
ENSP00000259271 |
| H. sapiens |
ENSP00000369175 |
| M. musculus |
ENSMUSG00000090665 |
| H. sapiens |
ENSP00000365437 |
| S. invicta |
SI2.2.0_16076 |
| N. vitripennis |
NV13994-PA |
| T. castaneum |
TC010581 |
| T. castaneum |
TC009324 |
| C. quinquefasciatus |
CPIJ010034 |
| H. sapiens |
ENSP00000410648 |
| M. musculus |
ENSMUSG00000023044 |
| M. musculus |
ENSMUSG00000026787 |
| A. mellifera |
GB19363-PA |
| H. sapiens |
ENSP00000415485 |