MidgeBase gene description page [Pn.09545]
Outline
| Gene ID | Pn.09545 |
| Type | Protein coding gene |
| Scaffold | PnScaf9815 |
| Start | 49 |
| End | 819 |
| Direction | - |
Sequence
Transcript: 651 (bp)
ATGGAAAAGTCTATGCGCTCGTGTGGACGACAACTCCTGAGAATCAATGGAAGCAATTTCCTCGTCTGTGCCGACACAATCGAAAATCTACGGAGAGAACTCGAGGCCGAAGTCGAAACAGTCAAAGAGGTCGACGTGCGGCAGTTGGAAAATCTGCATTACCGACACCCGGTAAATGCCGACGAAATTCTTCCGTTTTACTCGTCGAGTCACGTGCAAGCAGACAAGGGCACGGGACTCGTTCACACGGCTCCGACTCACGGCCAGGACGATTTTCTCGTGTTTCTCAACAAGAAAGTCCCGCTGAAATGCTTGGTGAATGAGAAGGGCTGCTACAACGACGAGGCGCCGGAATTTCTCAGAAGCAAGGAGGTGCTCGGCGACGGAAATAAACTGGTCATCGAGCATGTGGAGCGATCGAGCAATGTCGTGAAATTGGCGAGCTACAAGCACTCGTATCCGATAGATTGGCGGACAAAGAGCCCGGTGATAATTCTCGCCAGCGAGCAGTGGTTCATCAATTGCGAGAAAATCAAAGCGCAGGCCATCGAGAAGCTCGAAGAGGTCAACATCTTCCCGGACAAGTCCTCGAAAGTCTCCAAAAGTGTGCTCAAAACGCAGCTGGAGAAGCGGCCGTACTGAGGCGTGCCG
Protein: 217 (aa)
MEKSMRSCGRQLLRINGSNFLVCADTIENLRRELEAEVETVKEVDVRQLENLHYRHPVNADEILPFYSSSHVQADKGTGLVHTAPTHGQDDFLVFLNKKVPLKCLVNEKGCYNDEAPEFLRSKEVLGDGNKLVIEHVERSSNVVKLASYKHSYPIDWRTKSPVIILASEQWFINCEKIKAQAIEKLEEVNIFPDKSSKVSKSVLKTQLEKRPYXGVP
| Type | Start | End | Length |
| CDS |
52 |
61 |
10 |
| CDS |
120 |
723 |
604 |
| CDS |
783 |
819 |
37 |
| intron |
62 |
119 |
58 |
| intron |
724 |
782 |
59 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001865320 |
isoleucyl-tRNA synthetase [Culex quinquefasciatus] gb|EDS41531.1| isoleucyl-tRNA synthetase [Culex quinquefasciatus] |
1e-52 |
| InterPro |
IPR014729 |
Rossmann-like alpha/beta/alpha sandwich fold |
|
| InterPro |
IPR009008 |
Valyl/Leucyl/Isoleucyl-tRNA synthetase, class Ia, editing domain |
|
| InterPro |
IPR002300 |
Aminoacyl-tRNA synthetase, class Ia |
|
| InterPro |
IPR023585 |
Isoleucyl-tRNA synthetase, type 1 |
|
| Gene Ontology(BP) |
GO:0006418 |
tRNA aminoacylation for protein translation |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Gene Ontology(MF) |
GO:0002161 |
aminoacyl-tRNA editing activity |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0004812 |
aminoacyl-tRNA ligase activity |
|
| Gene Ontology(MF) |
GO:0004822 |
isoleucine-tRNA ligase activity |
|
| Pfam |
PF00133.17 |
tRNA synthetases class I (I, L, M and V) |
6.5e-38 |
| Pfam |
PF13603.1 |
Leucyl-tRNA synthetase, Domain 2 |
1.2e-05 |
| Pfam |
PF13085.1 |
2Fe-2S iron-sulfur cluster binding domain |
0.0061 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB13728-PA |
| H. sapiens |
ENSP00000355889 |
| P. humanus |
PHUM297910-PA |
| A. gambiae |
AGAP003156 |
| N. vitripennis |
NV18052-PA |
| D. plexippus |
DPOGS210182PA |
| H. melpomene |
HMEL012750-PA |
| P. vanderplanki |
Pv.07264 |
| D. melanogaster |
FBgn0036569 |
| D. plexippus |
DPOGS210181PA |
| T. castaneum |
TC002282 |
| H. sapiens |
ENSP00000303279 |
| M. musculus |
ENSMUSG00000026618 |
| A. aegypti |
AAEL009917 |
| B. mori |
BGIBMGA014150-TA |
| C. quinquefasciatus |
CPIJ015134 |