MidgeBase gene description page [Pn.09540]
Outline
| Gene ID | Pn.09540 |
| Type | Protein coding gene |
| Scaffold | PnScaf9808 |
| Start | 38546 |
| End | 39856 |
| Direction | + |
Sequence
Transcript: 1308 (bp)
ATGTCGCTTTCGACCAAATTTTTAATCTTAAGAAGCTTCTCGACCCAGCCGAACAGACGGGTCGTCGTGACGGGACTCGGAGTCGTTTCTGCGCTTGGAAACACCGTCGACTCAGCATGGAAGTTCCTGATAGACGGAAAAAGTGCGACAAAGAATCTTCCAGACACTGAAGAATACTCGAAATTGCCGTGCAAAGTGGCAGCGCCGATCGATCAAGAAGTCATTGAAGAAGTCCGCGCCAGTTTCTCGAAAACTGAGCTCAAGACGATGTCGCCAGCGACCGTGTACGCGATGCAAGCAGCCAAGCAGGCCTTCACCGCAGCCCAGTACACTCCAAAGACAGAACACGAGCAGCAGAGAACGGGAATTGCTGTTGGCATGGGAATGGTCGACTTGAGCGACATTTGCGAAACTGGCGAGAACTTGAAGAAGTCATACAACAAAATCAGCCCGTTTTTTGTGCCCCGAATCCTCATCAACATGGCGGCTGGTCAAATTAGCATCGCCTACAAGCTTCAAGGTCCAAACCATGCTTGCTCGACCGCTTGTGCAACCGGCCTGCATGCAATCGGCGACGCCTTTCGCTTCATCAAACACAACGACGCGGACGTGATGGTTTGCGGAGCGACCGAGGCCTGCATCAGTCCTCTCTCGATCGCCGGTTTCTGCAGACTCCGCGCACTTTCGACGGCCTTCAACAAGGAGCCGAGCGCAGCCTCGCGGCCATTCGACAAAAAGCGAGACGGCTTCGTGATGGGCGAAGGAGCTTGCATTTTCATCCTCGAGGAGCTCGAACACGCGCTGAAAAGAAACGCGACGATTTATGGCGAAATTCTCGGCTACGGACTCTCGGGTGACGCCTCGCATTTGACCGCGCCAAGCGAGGACGGACTTGGTGCGAGACTGGCCATGGAGCGTGCACTCAAGGACGCCGAAATTATGCCCTCGGAAGTCTCGTATGTCAATGCACACGCGACTTCGACTCCACTCGGCGACTCGATAGAGGCTCGCGCCATTCAGACGATTTTCGGTGGAAACGAGCAGCTGGCGATAAGCTCGACGAAGGGCTCGCACGGTCACTTGCTGGGAGCTGCTGGATCTCTCGAATGCCTTTTCACGGTGCTTGCATGCCGCGACGGCATGCTGCCGCCCACGATAAACATGAGCGAGCCCGAAGACGAATTTAAGAATGTGAATTTTGTGGCCAACGAGGCGCAGCAGTGGAGCACGAGGAAGCGACGAATAGCTGTAAAGAACTCGTTCGGATTTGGCGGAACAAACGTGTCGCTGATTGTTGGCCAGTATCCT
Protein: 436 (aa)
MSLSTKFLILRSFSTQPNRRVVVTGLGVVSALGNTVDSAWKFLIDGKSATKNLPDTEEYSKLPCKVAAPIDQEVIEEVRASFSKTELKTMSPATVYAMQAAKQAFTAAQYTPKTEHEQQRTGIAVGMGMVDLSDICETGENLKKSYNKISPFFVPRILINMAAGQISIAYKLQGPNHACSTACATGLHAIGDAFRFIKHNDADVMVCGATEACISPLSIAGFCRLRALSTAFNKEPSAASRPFDKKRDGFVMGEGACIFILEELEHALKRNATIYGEILGYGLSGDASHLTAPSEDGLGARLAMERALKDAEIMPSEVSYVNAHATSTPLGDSIEARAIQTIFGGNEQLAISSTKGSHGHLLGAAGSLECLFTVLACRDGMLPPTINMSEPEDEFKNVNFVANEAQQWSTRKRRIAVKNSFGFGGTNVSLIVGQYP
| Type | Start | End | Length |
| CDS |
38546 |
39853 |
1308 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_312104 |
AGAP002809-PA [Anopheles gambiae str. PEST] gb|EAA07755.5| AGAP002809-PA [Anopheles gambiae str. PEST] |
1e-161 |
| InterPro |
IPR016039 |
Thiolase-like |
|
| InterPro |
IPR020841 |
Polyketide synthase, beta-ketoacyl synthase domain |
|
| InterPro |
IPR014031 |
Beta-ketoacyl synthase, C-terminal |
|
| InterPro |
IPR017568 |
3-oxoacyl-[acyl-carrier-protein] synthase 2 |
|
| InterPro |
IPR014030 |
Beta-ketoacyl synthase, N-terminal |
|
| InterPro |
IPR016038 |
Thiolase-like, subgroup |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(BP) |
GO:0006633 |
fatty acid biosynthetic process |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0016747 |
transferase activity, transferring acyl groups other than amino-acyl groups |
|
| Pfam |
PF00109.21 |
Beta-ketoacyl synthase, N-terminal domain |
2e-58 |
| Pfam |
PF00108.18 |
Thiolase, N-terminal domain |
0.0022 |
| Pfam |
PF02801.17 |
Beta-ketoacyl synthase, C-terminal domain |
7.7e-35 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL012535-PA |
| H. sapiens |
ENSP00000280701 |
| T. castaneum |
TC011607 |
| M. musculus |
ENSMUSG00000021786 |
| N. vitripennis |
NV12210-PA |
| P. humanus |
PHUM291700-PA |
| A. mellifera |
GB16142-PA |
| D. plexippus |
DPOGS212154PA |
| C. quinquefasciatus |
CPIJ004308 |
| B. mori |
BGIBMGA006734-TA |
| D. melanogaster |
FBgn0037356 |
| A. aegypti |
AAEL002113 |
| P. vanderplanki |
Pv.15649 |
| A. gambiae |
AGAP002809 |
| S. invicta |
SI2.2.0_00733 |