MidgeBase gene description page [Pn.09536]
Outline
| Gene ID | Pn.09536 |
| Type | Protein coding gene |
| Scaffold | PnScaf9808 |
| Start | 31430 |
| End | 32523 |
| Direction | - |
Sequence
Transcript: 1020 (bp)
ATGTCGCTCAAAGCGAAGAAAGCATTTAAAGACTATGCGAAATTCATAGCTGGAAATGCGGAGACATGCAGCGATATCGAGATGATGACAAAGTATTTTGGATACTTTATTTCAGGAAAATTGTCAGATGGAAGCAACATTCTCACAGAAGCAATGCTTAGTTTCTCGAATCTGCTCGTAATCTTCAATGACCAGGTCATCAGAAAGCAAATCCAGCCGGAAGACGGCTCGAGAGAATTAAATAATGGCGAAGAACACAAATTGAAGCTGTTTCTGACAATCTTAGATAACGTCGAGGTGTTGATAGAAATCACGTCGAAGAAGATATTCGGCGATAAGAGAAAATTTATCGTCATTTTCATAATCCAGGCAGTGAAATGTATCGGCAGACTGGTGCTTCTTATCAAATATAAAAACAGAATATCGCAAACGCCCGCCATCGAATACCTCGACAGAAAGAACGTCTACAAAAATGTACCGCAAGGAAATCCTCTTCAGCCAGAGCTCAACGAAACTTCAATCACACTTAAGCTGAAGAGATCGGGCAAGACAATCAGAAAAGTTTCAAATGCACCGCCAATTTTCGCGAGAAACTTCAAAGCTCCCGAGCCCGAACTCGATGCAAACGACCGCTTCGGTCCCTTCAATCACAAGGCAATCAAAAATGCCGAACTTGTCTACGTCCTCAAGCCCATGATCCACTTGGGCTCGATTGCCGCCTTCGGCTACAAGTCTTGGAAAAGCTACTTGGTTTCGCTCTTCCTGGACACTTACAGTATTTTCCAATACTACAAGCACAGAGACGTCATGACTTCCGAACAGAAGCGCGAGCTGAGTCGAAGGTGTGTAAACATGCTGCTTTACATCCTACGATCGCCGTTCTACGACCAATATTCAGCCGATAAAATCGACTCCTTCATGCGAGCACTGAACAACATTCCATTTGCGAGGTTCATCGTTGAGCCGTACAGACAATACATACCTACTTATCAGGACACTTACTTCTACATGTTTAGCAAC
Protein: 340 (aa)
MSLKAKKAFKDYAKFIAGNAETCSDIEMMTKYFGYFISGKLSDGSNILTEAMLSFSNLLVIFNDQVIRKQIQPEDGSRELNNGEEHKLKLFLTILDNVEVLIEITSKKIFGDKRKFIVIFIIQAVKCIGRLVLLIKYKNRISQTPAIEYLDRKNVYKNVPQGNPLQPELNETSITLKLKRSGKTIRKVSNAPPIFARNFKAPEPELDANDRFGPFNHKAIKNAELVYVLKPMIHLGSIAAFGYKSWKSYLVSLFLDTYSIFQYYKHRDVMTSEQKRELSRRCVNMLLYILRSPFYDQYSADKIDSFMRALNNIPFARFIVEPYRQYIPTYQDTYFYMFSN
| Type | Start | End | Length |
| CDS |
31433 |
32337 |
905 |
| CDS |
32409 |
32523 |
115 |
| intron |
32338 |
32408 |
71 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001863776 |
peroxisomal membrane protein PEX16 [Culex quinquefasciatus] gb|EDS39127.1| peroxisomal membrane protein PEX16 [Culex quinquefasciatus] |
4e-68 |
| InterPro |
IPR013919 |
Peroxisome membrane protein, Pex16 |
|
| Pfam |
PF08610.5 |
Peroxisomal membrane protein (Pex16) |
7.8e-67 |
| Pfam |
PF00177.16 |
Ribosomal protein S7p/S5e |
0.12 |
| Pfam |
PF10855.3 |
Protein of unknown function (DUF2648) |
0.072 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS203964PA |
| H. sapiens |
ENSP00000433045 |
| C. quinquefasciatus |
CPIJ020196 |
| H. sapiens |
ENSP00000434654 |
| A. mellifera |
GB18640-PA |
| S. invicta |
SI2.2.0_10848 |
| H. sapiens |
ENSP00000368024 |
| T. castaneum |
TC007629 |
| M. musculus |
ENSMUSG00000027222 |
| H. sapiens |
ENSP00000241041 |
| H. melpomene |
HMEL013507-PA |
| A. gambiae |
AGAP002283 |
| B. mori |
BGIBMGA002029-TA |
| P. humanus |
PHUM457620-PA |
| H. sapiens |
ENSP00000431309 |
| C. quinquefasciatus |
CPIJ013683 |
| D. melanogaster |
FBgn0037019 |
| A. aegypti |
AAEL010461 |
| P. vanderplanki |
Pv.14306 |
| N. vitripennis |
NV17314-PA |