MidgeBase gene description page [Pn.09522]
Outline
| Gene ID | Pn.09522 |
| Type | Protein coding gene |
| Scaffold | PnScaf9800 |
| Start | 8317 |
| End | 11369 |
| Direction | + |
Sequence
Transcript: 2463 (bp)
ATGAAAATCTACACGAACGACTCGAATCCTCTGGGATTGAAGTTGCTGGTGATAAGCAAATTTGCAAAGAAAAACGTGGAACTAAAAATAGTTAATTTATCGGATGACTGTGTCAAAGAGCCAAAGCATTTGCCGTGTCTCGAGCTCGACAATGGCAATCAATTCTTCATGACGGACGCAGCGACAAAATATTTGATGCACGGAATTGAGGAAGAGTCGATAATCCGCAATCAATGGCTCGAATGGTCCACGTCCAGACTAGCGCCAGCCCTCGCCCAGTTCCTCTCGACCGGCCACCGCGTCGATCCGCACGTCACCGAAACGCTCAACTCGCTCGTCAAACTCCTCGACGACACGCTCGCAAAGTCGACTTTCCTCACGGGCGAGAAGCTGTCGTCAGCGGATTTGGCCGTGTGGTGCCTCCTCACGCCCGACGGAACGCTCAAAGGCTCGCACGACATCGACAACGTCCGGCGGTGGTATCGAAAAATCGCCGACCTTCCCGAGGTGAAAGAGTCGCTGACCTTGCTCGGGCCACTCAAAAACATCCACTTCGCGTCGCTGCAGCAGTGCAACCGTTTCGGCGGCCTGCACCACGTCGAAATGCGTCCGCACATTGCCGAGATCGAGACGAAGGTCCTGGCCGAGACACCGACCTCGATGGCCGAGACGGTGCTGCCGAACGAGATCGAGGAGGCGAAGCTCAACTTCGTGTCCGTGAAACGCGAGAAGCGAGCGGAGCCGCGAACCGTGCTGCCCAAGCCAAACGAACGCAACGTCCTCATCACATCCGCACTTCCATACGTGAACAACGTGCCGCACTTGGGCAACATCATCGGCTGCGTGCTGTCGGCGGACATTTTCGCGCGCTATTCCCGCATGTGCGGCTACAACACGCTCTACGTGTGCGGCACGGACGAGTACGGAACGGCGACCGAGACCAAGGCCATCTCCGAAGGGATGACGTGCAAGCAAATCTGCGACAAATACTTCGAGATGCACAACGCCATCTACCGGTGGTTCGGCATCGGCTTCGACTACTTCGGCCGCACGACCACGAACGAGCAGACGGAGATCGTGCAGGAGCTCTTCCTCGATCTCTACAAGCGCGACCTCATCGAGACGCAAGCTGTGGAGCAGCTGCTGTGCCAGAAGTGCGATCGCTTCCTCGCCGACCGCTTCGTCGAGGGCACGTGCCCGTTTGAGGGCTGCAACTACGAGGACGCGCGCGGCGACCAGTGCGACCGTTGCGGCAAGCTCATCAATGCGGTCGAGCTGATTCGACCGCGGTGCAAACTGTGCGGCACGGCGCCCGTTGTGCGCGAGTCAAACCAACTGTTCCTCAACCTGCCGAAAATCGAGCCGAAGCTGCGCACGTGGGTCGACTCGGTGGACGGCCTGTGGACGTCGAACGCGCGCACCATCACGAAGGGATGGCTGAAGGAGGGCCTCAAGGCGCGCTGCATCACGCGCGACCTCAAATGGGGCATCCCCGTGCCGCTCGAGGACTTCGCCAGCAAGGTGTTCTACGTGTGGTTCGACGCGCCCATCGGCTACATCTCCATCACCAGCAAGTACACGAAGGAGTGGCGCCAGTGGTGGCAGCCGAAAGACCCCTCCATCAACGTCGAGCTCTTCCAGTTCATGGCGAAGGACAATGTGCCGTTCCATTCGGTGATGTTCCCCGCGACGCTCATCGGCATCGACAAGGGCTACACGCTCGTGTCGCGCATCATCTCCACCGAGTATCTCAACTACGAGGACGGCAAGTTCAGCAAGAGCCGCGGCATCGGCGTCTTCGGAAATGATGCGCAGGACACGGGCATCGAGTCAGATATCTGGCGATTCTATTTGGCTTCAGCACGTCCCGAAGGACAGGACTCGAGCTTCAGCTGGAGCGACTTGGCGGCGCGCAACAACGGCGAGTTGTTGAACAATTTGGGAAATTTCATCAATCGTGCGCTCGTCTTTTGCGAGAAGAACTTTAATTCGACGATCTCGGAGGTGACGCTCACGCAAGACGACTCCGTGCTGATCGCCGTGGTGAACCGCGAGATTCGAGGCTACATCGGCTCGATGGAAAAGACGCGCTTCCGCGACGGCATTCGACACATTTTGGCGATATCGCGGCAGGGAAATCTCTACCTGCAGACGGAGAAGCCTTGGGTGCTGCTGAAGGGATCGCCCGAGCAAAAGGCGCGAGCTCACAGCGTCATCAGCTTGTCTTGCATCATCACGAGCTTGCTCGCGTCTCTTCTCTTCCCCTTCATGCCGACCACCTCGCGACGAATCTTCACTCAACTCAACACTACCGGCAACTCCTTCGACCCGACAAAACCATATTTGACAGTCGTTCTCCAGGCAGGACACAAGATTGGCCAGCCATCTCCGCTTTTCACAAAAATCGAACAAAGTGTTGTTGATCAGCTGAAGGCTAAATATTCTGGCGTGCAAACCGCTGCA
Protein: 821 (aa)
MKIYTNDSNPLGLKLLVISKFAKKNVELKIVNLSDDCVKEPKHLPCLELDNGNQFFMTDAATKYLMHGIEEESIIRNQWLEWSTSRLAPALAQFLSTGHRVDPHVTETLNSLVKLLDDTLAKSTFLTGEKLSSADLAVWCLLTPDGTLKGSHDIDNVRRWYRKIADLPEVKESLTLLGPLKNIHFASLQQCNRFGGLHHVEMRPHIAEIETKVLAETPTSMAETVLPNEIEEAKLNFVSVKREKRAEPRTVLPKPNERNVLITSALPYVNNVPHLGNIIGCVLSADIFARYSRMCGYNTLYVCGTDEYGTATETKAISEGMTCKQICDKYFEMHNAIYRWFGIGFDYFGRTTTNEQTEIVQELFLDLYKRDLIETQAVEQLLCQKCDRFLADRFVEGTCPFEGCNYEDARGDQCDRCGKLINAVELIRPRCKLCGTAPVVRESNQLFLNLPKIEPKLRTWVDSVDGLWTSNARTITKGWLKEGLKARCITRDLKWGIPVPLEDFASKVFYVWFDAPIGYISITSKYTKEWRQWWQPKDPSINVELFQFMAKDNVPFHSVMFPATLIGIDKGYTLVSRIISTEYLNYEDGKFSKSRGIGVFGNDAQDTGIESDIWRFYLASARPEGQDSSFSWSDLAARNNGELLNNLGNFINRALVFCEKNFNSTISEVTLTQDDSVLIAVVNREIRGYIGSMEKTRFRDGIRHILAISRQGNLYLQTEKPWVLLKGSPEQKARAHSVISLSCIITSLLASLLFPFMPTTSRRIFTQLNTTGNSFDPTKPYLTVVLQAGHKIGQPSPLFTKIEQSVVDQLKAKYSGVQTAA
| Type | Start | End | Length |
| CDS |
8317 |
8419 |
103 |
| CDS |
8808 |
10519 |
1712 |
| CDS |
10646 |
11163 |
518 |
| CDS |
11237 |
11366 |
130 |
| intron |
8420 |
8807 |
388 |
| intron |
10520 |
10645 |
126 |
| intron |
11164 |
11236 |
73 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_317601 |
AGAP007891-PA [Anopheles gambiae str. PEST] gb|EAA12906.4| AGAP007891-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR001412 |
Aminoacyl-tRNA synthetase, class I, conserved site |
|
| InterPro |
IPR017933 |
Glutathione S-transferase/chloride channel, C-terminal |
|
| InterPro |
IPR015413 |
Methionyl/Leucyl tRNA synthetase |
|
| InterPro |
IPR009080 |
Aminoacyl-tRNA synthetase, class 1a, anticodon-binding |
|
| InterPro |
IPR014729 |
Rossmann-like alpha/beta/alpha sandwich fold |
|
| InterPro |
IPR014758 |
Methionyl-tRNA synthetase |
|
| InterPro |
IPR010987 |
Glutathione S-transferase, C-terminal-like |
|
| InterPro |
IPR023458 |
Methionyl-tRNA synthetase, type 1 |
|
| Gene Ontology(BP) |
GO:0006418 |
tRNA aminoacylation for protein translation |
|
| Gene Ontology(BP) |
GO:0006431 |
methionyl-tRNA aminoacylation |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0004825 |
methionine-tRNA ligase activity |
|
| Gene Ontology(MF) |
GO:0004812 |
aminoacyl-tRNA ligase activity |
|
| Pfam |
PF00133.17 |
tRNA synthetases class I (I, L, M and V) |
2.5e-10 |
| Pfam |
PF08264.8 |
Anticodon-binding domain of tRNA |
3.9e-06 |
| Pfam |
PF01406.14 |
tRNA synthetases class I (C) catalytic domain |
0.14 |
| Pfam |
PF13410.1 |
Glutathione S-transferase, C-terminal domain |
0.00014 |
| Pfam |
PF09334.6 |
tRNA synthetases class I (M) |
1.2e-142 |
| Pfam |
PF00043.20 |
Glutathione S-transferase, C-terminal domain |
0.00012 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000040354 |
| A. aegypti |
AAEL014709 |
| H. melpomene |
HMEL009524-PA |
| B. mori |
BGIBMGA003259-TA |
| A. mellifera |
GB18476-PA |
| A. aegypti |
AAEL014494 |
| H. sapiens |
ENSP00000262027 |
| D. melanogaster |
FBgn0034401 |
| A. gambiae |
AGAP007891 |
| P. humanus |
PHUM118730-PA |
| H. sapiens |
ENSP00000446168 |
| T. castaneum |
TC009707 |
| S. invicta |
SI2.2.0_15365 |
| D. plexippus |
DPOGS210187PA |
| C. quinquefasciatus |
CPIJ802185 |
| P. vanderplanki |
Pv.01859 |
| H. sapiens |
ENSP00000314653 |
| N. vitripennis |
NV14554-PA |