MidgeBase gene description page [Pn.09516]
Outline
| Gene ID | Pn.09516 |
| Type | Protein coding gene |
| Scaffold | PnScaf9793 |
| Start | 52987 |
| End | 56920 |
| Direction | - |
Sequence
Transcript: 1560 (bp)
ATGAGCACGAATCATACAACAAATCATGAGCAGCAACCACCTGCTAGCAATCGAGATCGTAGAAGTGTACTTGGCGAAAATCTCCTGACAATCGTTACAATTATTGGTGTAGTGGGTGGCACAGTTTTTGGACTTATTTTAAAAAAATCCGACCACAAATGGACAGAGCGCGACATAATGTACATTCAATATCCTGGTGATTTATTTTTAAGGATGCTTAAATGTCTCATTGTGCCATTAATTGTAGCATCAATCACTAGTGCTATCGGCGCTCTAGATTTAAGTTTATCGAAAAGAATTGCAATGAGATCAATAATTTATTATTTTACCACCACGATCTGTGCAGTAATCCTTGGAATTGTTCTCGTAACCGTTTTCCAACCCGGTCGAGGATACGACGCGAAAGTAGACGGTGAGACAAAGGTCTCTCGCGATGTTCTAACTGCCGACACTCTTCTTGATTTAGTAAGAAATCTCTTTCCGCCAAACATCATCCAAGCGACAATGTTTCAGTACCGAACACATTTGGAACCTCCAGCAAATGTAACTGCAGTTACGGGTAATGGCACTAAAATAAAAATATCCGAGTTGTCCCCTGACGTCCGTAACCAGTTCACTATTAGCAAATATAAAATAACTGATTATGAAGGCAGAGAAGTCCCATTGACGGAATTTAAAATAAAGGGACAATGGCGTGAAGGTATGAATGTGTTAGGTTTGGTTATGTTCAGCGTAGTGCTTGGCGCAACAATCGGAAAGATGCGTGAACGAGGAAAGCCAATTCAGGACTTTCTGGTGTCATTGAGCGAGGCCATGATGATTATTACACGCTGGGTTATTTGGCTATCGCCAATCGGAGTCTTCTTCCTCATCACTGCCAAGATTCTCGAGATGGAGTCGCTCGCTCAAGTTATAGGACAGCTGGGAAAATACTTTATGACTGTCATGTTTGGTCTCTTCATACACGGATTCGGAACAATTGCTGTCATTTTCTATTTGGTTGTACGCAAACTTCCCTATGGATATGTCATTAAGATGTCCCAAGTTTTGGCAACTGCTTTCGGTACCGGCTCATCATCGGCTACAATGCCCATCACCATTAATTGCTTAGACAACATGGGAATAGATCCACGCGTCACGAGATTTGTCGTTCCGGTTGGAGCCACAATAAACATGGATGGCACAGCTTTATACGAGGCCGTTGCTGCTTTGTTCATTGCCCAGTTACGAAACATTGATCTGACACTGGGACACATAGTTGCAGTCAGTGTAACGGCGACTGCAGCCTCAATCGGTGCAGCTGGCATTCCTCAGGCTGGTCTAATCACGATGGTCATGGTCCTCGACACTGTCGGCCTGCCCGCTGAAGATGTAACCATAATTATCGCCGTCGACTGGCTTCTTGATCGATTCCGAACAACAATCAATGTCATGTGTGATGCACTCGGTACCATTCTTGTGGATCACTTATCGCGAGGAGAACTTAGCAGAGCAGGCGGAGGAGCTCGTTTGGAGTCGGGTGAGCCGCACGAGTTAGTTGAACTACATCAATCAAAGGAA
Protein: 520 (aa)
MSTNHTTNHEQQPPASNRDRRSVLGENLLTIVTIIGVVGGTVFGLILKKSDHKWTERDIMYIQYPGDLFLRMLKCLIVPLIVASITSAIGALDLSLSKRIAMRSIIYYFTTTICAVILGIVLVTVFQPGRGYDAKVDGETKVSRDVLTADTLLDLVRNLFPPNIIQATMFQYRTHLEPPANVTAVTGNGTKIKISELSPDVRNQFTISKYKITDYEGREVPLTEFKIKGQWREGMNVLGLVMFSVVLGATIGKMRERGKPIQDFLVSLSEAMMIITRWVIWLSPIGVFFLITAKILEMESLAQVIGQLGKYFMTVMFGLFIHGFGTIAVIFYLVVRKLPYGYVIKMSQVLATAFGTGSSSATMPITINCLDNMGIDPRVTRFVVPVGATINMDGTALYEAVAALFIAQLRNIDLTLGHIVAVSVTATAASIGAAGIPQAGLITMVMVLDTVGLPAEDVTIIIAVDWLLDRFRTTINVMCDALGTILVDHLSRGELSRAGGGARLESGEPHELVELHQSKE
| Type | Start | End | Length |
| CDS |
52990 |
53037 |
48 |
| CDS |
53127 |
53235 |
109 |
| CDS |
53305 |
53393 |
89 |
| CDS |
53459 |
53504 |
46 |
| CDS |
53562 |
53654 |
93 |
| CDS |
53786 |
54118 |
333 |
| CDS |
54203 |
54386 |
184 |
| CDS |
55997 |
56184 |
188 |
| CDS |
56345 |
56506 |
162 |
| CDS |
56613 |
56920 |
308 |
| intron |
53038 |
53126 |
89 |
| intron |
53236 |
53304 |
69 |
| intron |
53394 |
53458 |
65 |
| intron |
53505 |
53561 |
57 |
| intron |
53655 |
53785 |
131 |
| intron |
54119 |
54202 |
84 |
| intron |
54387 |
55996 |
1610 |
| intron |
56185 |
56344 |
160 |
| intron |
56507 |
56612 |
106 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001842803 |
excitatory amino acid transporter 3 [Culex quinquefasciatus] gb|EDS28168.1| excitatory amino acid transporter 3 [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR001991 |
Sodium:dicarboxylate symporter |
|
| InterPro |
IPR018107 |
Sodium:dicarboxylate symporter, conserved site |
|
| Gene Ontology(BP) |
GO:0006835 |
dicarboxylic acid transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0017153 |
sodium:dicarboxylate symporter activity |
|
| Pfam |
PF12794.2 |
Mechanosensitive ion channel inner membrane domain 1 |
0.053 |
| Pfam |
PF00375.13 |
Sodium:dicarboxylate symporter family |
7.8e-129 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.04069 |
| Pn.08804 |
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV50166-PA |
| M. musculus |
ENSMUSG00000008932 |
| M. musculus |
ENSMUSG00000005357 |
| P. vanderplanki |
Pv.08318 |
| H. sapiens |
ENSP00000446175 |
| H. sapiens |
ENSP00000360549 |
| H. sapiens |
ENSP00000371343 |
| C. quinquefasciatus |
CPIJ802224 |
| S. invicta |
SI2.2.0_04721 |
| H. melpomene |
HMEL011946-PA |
| H. sapiens |
ENSP00000408801 |
| A. aegypti |
AAEL004496 |
| A. gambiae |
AGAP006718 |
| C. quinquefasciatus |
CPIJ001134 |
| P. vanderplanki |
Pv.10105 |
| A. aegypti |
AAEL013109 |
| P. vanderplanki |
Pv.03232 |
| N. vitripennis |
NV18664-PA |
| A. mellifera |
GB16911-PA |
| H. sapiens |
ENSP00000221742 |
| T. castaneum |
TC008606 |
| H. sapiens |
ENSP00000265113 |
| A. mellifera |
GB13253-PA |
| M. musculus |
ENSMUSG00000024935 |
| D. melanogaster |
FBgn0026439 |
| A. gambiae |
AGAP009443 |
| H. sapiens |
ENSP00000409386 |
| T. castaneum |
TC003794 |
| H. sapiens |
ENSP00000262352 |
| D. plexippus |
DPOGS210424PA |
| C. quinquefasciatus |
CPIJ802223 |
| A. aegypti |
AAEL013111 |
| P. humanus |
PHUM537500-PA |