MidgeBase gene description page [Pn.09511]
Outline
| Gene ID | Pn.09511 |
| Type | Protein coding gene |
| Scaffold | PnScaf9793 |
| Start | 22936 |
| End | 24796 |
| Direction | - |
Sequence
Transcript: 441 (bp)
ATGACAAATTATTCCGAGGATCAATTGGCTGAATTCCAAGAAGCATTCAATTTGTTTGACAATAGAGGTGATGGCAAGATTCAGCAGCAGCAAATTGGCGAGTGTCTTCGTGCTTTAGGTCAAAATCCTACGGAGAGCGACGTCAAAAAGTACACCCATCAATTGAAGCCCGATGAAAGAATATCATTTGAAGTTTTCTTGCCCATCTATCAAGCTATTTCAAAAGTTCGATCTGGAGATACTGCTGATGACTTTATCGAAGGTCTTCGTCACTTTGACAAGGACGCCAGCGGCTTCATTTCTTCAGCCGAGCTCCGACACTTGTTGACCACACTCGGGGAAAAATTGAGTGACGAAGAGGTTGAGCAACTTTTATCAAATCAAGAGGACTCGCAAGGAAATGTCAACTACGAGGAGTTTGTGCGAATGGTAATGAATGGC
Protein: 147 (aa)
MTNYSEDQLAEFQEAFNLFDNRGDGKIQQQQIGECLRALGQNPTESDVKKYTHQLKPDERISFEVFLPIYQAISKVRSGDTADDFIEGLRHFDKDASGFISSAELRHLLTTLGEKLSDEEVEQLLSNQEDSQGNVNYEEFVRMVMNG
| Type | Start | End | Length |
| CDS |
22939 |
23166 |
228 |
| CDS |
23272 |
23453 |
182 |
| CDS |
24698 |
24725 |
28 |
| CDS |
24794 |
24796 |
3 |
| intron |
23167 |
23271 |
105 |
| intron |
23454 |
24697 |
1244 |
| intron |
24726 |
24793 |
68 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ACZ28299 |
putative myosin light chain 1 [Simulium nigrimanum] |
4e-77 |
| InterPro |
IPR018247 |
EF-Hand 1, calcium-binding site |
|
| InterPro |
IPR018249 |
EF-HAND 2 |
|
| InterPro |
IPR011992 |
EF-hand-like domain |
|
| InterPro |
IPR002048 |
Calcium-binding EF-hand |
|
| Gene Ontology(MF) |
GO:0005509 |
calcium ion binding |
|
| Pfam |
PF03672.8 |
Uncharacterised protein family (UPF0154) |
0.0013 |
| Pfam |
PF13499.1 |
EF-hand domain pair |
3.7e-14 |
| Pfam |
PF00036.27 |
EF hand |
1.1e-14 |
| Pfam |
PF11505.3 |
Protein of unknown function (DUF3216) |
0.049 |
| Pfam |
PF13405.1 |
EF-hand domain |
2e-14 |
| Pfam |
PF13833.1 |
EF-hand domain pair |
5.1e-09 |
| Pfam |
PF13202.1 |
EF hand |
1.7e-06 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000301540 |
| H. sapiens |
ENSP00000446714 |
| P. humanus |
PHUM172560-PA |
| C. quinquefasciatus |
CPIJ801935 |
| H. sapiens |
ENSP00000446955 |
| H. melpomene |
HMEL004490-PA |
| A. gambiae |
AGAP007806 |
| S. invicta |
SI2.2.0_04161 |
| H. sapiens |
ENSP00000207437 |
| H. sapiens |
ENSP00000343321 |
| H. sapiens |
ENSP00000446643 |
| H. sapiens |
ENSP00000448101 |
| M. musculus |
ENSMUSG00000061816 |
| T. castaneum |
TC008661 |
| N. vitripennis |
NV19173-PA |
| D. plexippus |
DPOGS209474PA |
| A. mellifera |
GB10503-PA |
| P. vanderplanki |
Pv.08324 |
| D. melanogaster |
FBgn0004687 |
| M. musculus |
ENSMUSG00000090841 |
| H. sapiens |
ENSP00000307280 |
| B. mori |
BGIBMGA005853-TA |
| M. musculus |
ENSMUSG00000039824 |
| A. aegypti |
AAEL007439 |
| H. sapiens |
ENSP00000450385 |