MidgeBase gene description page [Pn.09470]
Outline
| Gene ID | Pn.09470 |
| Type | Protein coding gene |
| Scaffold | PnScaf9741 |
| Start | 35276 |
| End | 37421 |
| Direction | + |
Sequence
Transcript: 2025 (bp)
ATGAGCAGAAAGAGAGAACCAAGCTCGAGCAGTGATAGTGTAGACAGCGCGGAAGAGGAACGACGCAAGGACATTAGAGAACGTGACGAATTTTCGAAGCGCTTGAAGGAAAAGGATGAAACAAAAACGAGAAAAATTGTTGAGGCACAAAACAAGAAAGCATACGAAGAAGCGGCTAAAAGACTCAAACTAGAGACTGAGGATCGAGAGAAGCTCGTTCCGCAACTTAGGCTCCAATCGCGTCGTGAGTATTTGGCGAAAAGAAAAGAGGACAAAGTCTCCGAATTAGAGGCCGACATCAGAGATGACGAGTATTTGTTCGAGGAATCACAGCTCACGCTCAAGGAGAGAAGGGAAAGAGAGTACAAGAGGCAAGTTCTCGAAATCGCCAAGCAACATGAAAAGGCGAGGGAGCTCGAACGGGTCCAGCGCTATCACATGCCTAAGGACATGAAAAAAGGTGAAAAGGGCGAATATGTCGAGGTCGATGAGCGAGAAAGGATGCCGCACTCGGAGCAAAAGAAGTGGGAGGCCGAGCAGTTGTCTTCAGCCCTCTTCAAGTTCGGCGCCAAAGATGCCAGACAGCAGCAAGAGTACGAGCTCCTGCTGGAGGATGAAATCGAGTTCGTGCAAGTGCTCACGATGGACGGCTCAAAGGACCGAGATAAGAAGCCAGAGGTCACAGAGGCCGAAAAGCAGAAGATGGACATTGAGGAAACGAAAAAAAGCCTCCCTGTGTATCCATTCCGAGACGATCTCATTCGGGCGATCGAAGAGCACCAGGTGCTGATCATTGAAGGCGAAACCGGTTCGGGAAAGACGACACAGATACCTCAGTACCTCTACGAGGCGGGATTTACGAAAGACGGCAAAAAGATTGGCTGCACGCAGCCGAGGCGTGTGGCCGCAATGTCAGTCGCAGCTCGCGTCGCACAAGAGATGGGCGTGAAGCTGGGAAACGAAGTCGGTTACTCGATTCGTTTCGAGGACTGCACGTCCGAGCGAACCGTCATGAAATACATGACGGACGGTACGCTGCATCGAGAGTTCTTGAGCGAGCCCGACTTGGCGTCATACAGCGTGATGATAATTGACGAAGCCCACGAGCGAACGCTCCACACTGACATTCTCTTTGGACTCGTGAAGGACATTGCCAGATTTCGACCCGACCTGAAACTTCTCATCTCAAGCGCAACACTCGATGCGGAAAAGTTTTCGGGCTTCTTCGACGATGCGCCGATTTTCCGCATTCCCGGTCGCCGCTTTCCGGTCGATATTTATTACACGAAGGCACCAGAAGCCGACTACATCGATGCATGTGTAGTTTCAATTTTGCAAATTCATGCGACGCAACCGTTAGGCGACATTCTAGTTTTCCTCACCGGCCAGGAGGAAATTGAGACTTGTCATGAAATTCTCACCGATCGAGTCAAGCGATTAGGATCGAAATTGAAGGAGCTTCTCATCCTGCCAATTTACGCAAACCTACCGTCCGACATGCAGGCGAAAATTTTCGAACCGACACCGCCGAACGCGAGAAAGGTCGTGTTGGCAACAAACATCGCCGAGACCTCGCTCACAATCGACAACATTATTTATGTCATCGATCCGGGCTTTGCGAAGCAGAACAATTTCAACTCACGAACCGGTATGGAGACCCTCATGGTCGTTCCGATTTCGAAGGCGTCTGCTAATCAGCGCGCTGGAAGAGCTGGCCGCGTCGCAGCTGGCAAATGCTTTCGACTGTACACGGCGTGGGCATATCAGCACGAGCTCGAGGAAAACACAATTCCCGAGATTATGCGCATAAATTTGGGCAATGCTGTGCTCATGCTGAAAGCTCTCGGCATCAATGATTTATTGCACTTTGATTTTCTCGACCCGCCGCCCTCCGAGACGCTCGTGCTGGCCTTGGAGCAGCTGTACGCTCTCGGCGCCCTTAATCACCACGGCGAGCTCACGAAGATGGGAAGACGAATGGCCGATGCTCGGAGGAGATTGTCACAATTGCCGCCATGCTCTCGG
Protein: 675 (aa)
MSRKREPSSSSDSVDSAEEERRKDIRERDEFSKRLKEKDETKTRKIVEAQNKKAYEEAAKRLKLETEDREKLVPQLRLQSRREYLAKRKEDKVSELEADIRDDEYLFEESQLTLKERREREYKRQVLEIAKQHEKARELERVQRYHMPKDMKKGEKGEYVEVDERERMPHSEQKKWEAEQLSSALFKFGAKDARQQQEYELLLEDEIEFVQVLTMDGSKDRDKKPEVTEAEKQKMDIEETKKSLPVYPFRDDLIRAIEEHQVLIIEGETGSGKTTQIPQYLYEAGFTKDGKKIGCTQPRRVAAMSVAARVAQEMGVKLGNEVGYSIRFEDCTSERTVMKYMTDGTLHREFLSEPDLASYSVMIIDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATLDAEKFSGFFDDAPIFRIPGRRFPVDIYYTKAPEADYIDACVVSILQIHATQPLGDILVFLTGQEEIETCHEILTDRVKRLGSKLKELLILPIYANLPSDMQAKIFEPTPPNARKVVLATNIAETSLTIDNIIYVIDPGFAKQNNFNSRTGMETLMVVPISKASANQRAGRAGRVAAGKCFRLYTAWAYQHELEENTIPEIMRINLGNAVLMLKALGINDLLHFDFLDPPPSETLVLALEQLYALGALNHHGELTKMGRRMADARRRLSQLPPCSR
| Type | Start | End | Length |
| CDS |
35276 |
36716 |
1441 |
| CDS |
36780 |
37323 |
544 |
| CDS |
37379 |
37418 |
40 |
| intron |
36717 |
36779 |
63 |
| intron |
37324 |
37378 |
55 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001845160 |
pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 [Culex quinquefasciatus] gb|EDS39324.1| pre-mRNA-splicing factor ATP-dependent RNA helicase prp22 [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR011545 |
DNA/RNA helicase, DEAD/DEAH box type, N-terminal |
|
| InterPro |
IPR002464 |
DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site |
|
| InterPro |
IPR014001 |
Helicase, superfamily 1/2, ATP-binding domain |
|
| InterPro |
IPR001650 |
Helicase, C-terminal |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0004386 |
helicase activity |
|
| Gene Ontology(MF) |
GO:0008026 |
ATP-dependent helicase activity |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF07652.9 |
Flavivirus DEAD domain |
0.0013 |
| Pfam |
PF09848.4 |
Uncharacterized conserved protein (DUF2075) |
0.0093 |
| Pfam |
PF04408.18 |
Helicase associated domain (HA2) |
0.00075 |
| Pfam |
PF00270.24 |
DEAD/DEAH box helicase |
6.2e-06 |
| Pfam |
PF00437.15 |
Type II/IV secretion system protein |
0.00069 |
| Pfam |
PF13476.1 |
AAA domain |
1.8 |
| Pfam |
PF13245.1 |
Part of AAA domain |
0.0015 |
| Pfam |
PF13173.1 |
AAA domain |
9.5 |
| Pfam |
PF06745.8 |
KaiC |
0.13 |
| Pfam |
PF13401.1 |
AAA domain |
1.8e-05 |
| Pfam |
PF13604.1 |
AAA domain |
0.00049 |
| Pfam |
PF13086.1 |
AAA domain |
2.6 |
| Pfam |
PF00271.26 |
Helicase conserved C-terminal domain |
3.8e-12 |
| Pfam |
PF04851.10 |
Type III restriction enzyme, res subunit |
4.2 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.03257 |
| Pn.07023 |
| Pn.06193 |
| Pn.14709 |
| Pn.12954 |
| Pn.15776 |
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA003195-TA |
| P. humanus |
PHUM293490-PA |
| D. plexippus |
DPOGS212385PA |
| S. invicta |
SI2.2.0_02380 |
| A. mellifera |
GB15401-PA |
| A. mellifera |
GB19792-PA |
| H. sapiens |
ENSP00000336741 |
| H. sapiens |
ENSP00000365620 |
| P. humanus |
PHUM299460-PA |
| N. vitripennis |
NV11944-PA |
| P. vanderplanki |
Pv.05452 |
| T. castaneum |
TC003896 |
| H. sapiens |
ENSP00000373071 |
| M. musculus |
ENSMUSG00000024422 |
| C. quinquefasciatus |
CPIJ003520 |
| D. melanogaster |
FBgn0031631 |
| C. quinquefasciatus |
CPIJ004458 |
| P. vanderplanki |
Pv.08932 |
| P. vanderplanki |
Pv.09830 |
| M. musculus |
ENSMUSG00000040620 |
| C. quinquefasciatus |
CPIJ011263 |
| M. musculus |
ENSMUSG00000009145 |
| H. sapiens |
ENSP00000262415 |
| P. humanus |
PHUM078070-PA |
| H. sapiens |
ENSP00000389862 |
| B. mori |
BGIBMGA009578-TA |
| H. melpomene |
HMEL007792-PA |
| M. musculus |
ENSMUSG00000029169 |
| T. castaneum |
TC000481 |
| P. humanus |
PHUM227550-PA |
| A. gambiae |
AGAP006138 |
| H. sapiens |
ENSP00000393958 |
| H. sapiens |
ENSP00000437898 |
| H. sapiens |
ENSP00000284690 |
| A. aegypti |
AAEL008140 |
| C. quinquefasciatus |
CPIJ008192 |
| P. vanderplanki |
Pv.08106 |
| H. sapiens |
ENSP00000408956 |
| N. vitripennis |
NV13580-PA |
| N. vitripennis |
NV10615-PA |
| A. gambiae |
AGAP009093 |
| M. musculus |
ENSMUSG00000037993 |
| H. sapiens |
ENSP00000437886 |
| N. vitripennis |
NV10474-PA |
| M. musculus |
ENSMUSG00000027655 |
| D. plexippus |
DPOGS214155PA |
| A. gambiae |
AGAP011149 |
| B. mori |
BGIBMGA002895-TA |
| A. mellifera |
GB17778-PA |
| H. sapiens |
ENSP00000390319 |
| D. melanogaster |
FBgn0086444 |
| H. sapiens |
ENSP00000252011 |
| H. sapiens |
ENSP00000396193 |
| P. vanderplanki |
Pv.00296 |
| C. quinquefasciatus |
CPIJ003160 |
| H. sapiens |
ENSP00000362420 |
| P. humanus |
PHUM146750-PB |
| H. sapiens |
ENSP00000268482 |
| T. castaneum |
TC013528 |
| H. sapiens |
ENSP00000391789 |
| H. sapiens |
ENSP00000411743 |
| H. sapiens |
ENSP00000409038 |
| H. melpomene |
HMEL013943-PA |
| A. mellifera |
GB16946-PA |
| A. gambiae |
AGAP008528 |
| H. melpomene |
HMEL012473-PA |
| P. vanderplanki |
Pv.05325 |
| D. plexippus |
DPOGS211215PA |
| A. aegypti |
AAEL004419 |
| H. sapiens |
ENSP00000377523 |
| D. melanogaster |
FBgn0026713 |
| H. sapiens |
ENSP00000409812 |
| H. sapiens |
ENSP00000393356 |
| T. castaneum |
TC000112 |
| H. sapiens |
ENSP00000409091 |
| H. sapiens |
ENSP00000409558 |
| A. aegypti |
AAEL001618 |
| H. sapiens |
ENSP00000414630 |
| N. vitripennis |
NV10589-PA |
| D. melanogaster |
FBgn0033160 |
| H. sapiens |
ENSP00000413779 |
| T. castaneum |
TC011820 |
| C. quinquefasciatus |
CPIJ017391 |
| H. sapiens |
ENSP00000458925 |
| H. sapiens |
ENSP00000414335 |
| H. sapiens |
ENSP00000390938 |
| A. mellifera |
GB10058-PA |
| H. melpomene |
HMEL008640-PA |
| S. invicta |
SI2.2.0_01104 |
| P. vanderplanki |
Pv.05206 |
| H. sapiens |
ENSP00000284688 |
| A. aegypti |
AAEL014106 |
| P. humanus |
PHUM410360-PA |
| H. sapiens |
ENSP00000413416 |
| C. quinquefasciatus |
CPIJ020095 |
| H. sapiens |
ENSP00000365625 |
| H. sapiens |
ENSP00000373070 |
| D. melanogaster |
FBgn0086895 |
| A. aegypti |
AAEL014256 |
| H. sapiens |
ENSP00000405391 |
| M. musculus |
ENSMUSG00000034931 |
| D. plexippus |
DPOGS214457PA |
| A. gambiae |
AGAP007212 |
| H. sapiens |
ENSP00000399101 |
| N. vitripennis |
NV15194-PA |
| H. sapiens |
ENSP00000406462 |
| H. sapiens |
ENSP00000403116 |
| H. sapiens |
ENSP00000362422 |
| A. aegypti |
AAEL014155 |
| A. mellifera |
GB11427-PA |
| D. plexippus |
DPOGS212437PA |
| A. gambiae |
AGAP010872 |
| P. humanus |
PHUM146750-PA |
| H. sapiens |
ENSP00000357710 |
| S. invicta |
SI2.2.0_03476 |
| H. sapiens |
ENSP00000384621 |
| T. castaneum |
TC013109 |
| D. melanogaster |
FBgn0032194 |
| P. vanderplanki |
Pv.05323 |
| A. aegypti |
AAEL010732 |
| A. aegypti |
AAEL011534 |
| H. sapiens |
ENSP00000225296 |