MidgeBase gene description page [Pn.09460]
Outline
| Gene ID | Pn.09460 |
| Type | Protein coding gene |
| Scaffold | PnScaf9741 |
| Start | 46 |
| End | 8156 |
| Direction | + |
Sequence
Transcript: 2736 (bp)
ATGCAAATCACATTTAAAGTAGTGAAGCCAAACCCGAGCACATGCACGTGTTTTGTTTCGCATCCGAACGTGCAACAGCTCCTGGCCTCCATTTGGTACGAGGGACTGCCGGGCTTTCGTCGAAAGAACATGGCGCTCCAGTCGCTGGAAATTTGTCGAATCGGAATAATGTTTCCGCTCTTCTCCGTGTCTTACGTTCTCGCACCGCACTCGTCGTTCGGACAGACCATGAGAAAGCCATTTATCAAGTTCATTTGCCACAGTGCATCGTACTTTACATTTCTGTTTCTTTTGATGCTCGCATCGCAACGCATCGAATCTGTGATAGACTTTGGCGAGGAGGAGGAGCAGAAGGTCGGCGAGAAGGAGTTGACGAAGCGCGGCGCAGCGCCGACCTTCATCGAGTGGATGATTTTATCGTGGGTGAGCGGGTTGATATGGAGTGAGGTGAAACAATTGTGGGATGTTGGGCTGAAGGAATATGTTCACGACATGTGGAATGTGATAGATTTCATAACAAACTCATTGTATGTCGCTACGGTTGCGCTTCGTGTCGTTTCCTACTATCAGGTGCAAAGAGAAATGGAAGTCGATCCCAACGCTGAACTGACGCCCAGAGAAAAGTGGGACGCCATCGATCCACTGCTGATTTCCGAAGGATTGTTCAGCGCGGGAAACATCTTCAGTTCCTTAAAGCTCGTCTACATCTTCTCGGTGAACCCGCATTTGGGGCCGTTGCAGGTCTCGCTCTCTCGCATGGTAACCGATATCATAAAGTTCTTCTTTTTATACGTTCTCGTTCTGTTTGCCTTCAGTAGTGGCTTAAATCAATTATTATGGTATTATGCTGACTTGGAGAAAAAGCGCTGCATAGATCTATCATCGCCGATGATGGCGAACGCCACGAATATCGACACGAATGCATGTCTCGTGTGGCGTAGATTCGCAAACCTTTTCGAGACGACACAAACACTGTTCTGGGCGGCGTTCGGCCTCATCGATCTGGAAAGTTTCGAGCTCGACGGCATCAAAATATTTACGCGTTTCTGGGGCATGTTGATGTTTGGTTGCTATAGCGTTATCAACATTGTTGTGCTCCTCAACTTGCTTATCGCCATGATGAATCACTCATATCAATTGATATCGGAACGTGCCGACACCGAGTGGAAGTTTGCGCGCTCGAAATTGTGGATCAGTTACTTTGAGGAAGGAGCGACCTGCCCGCCACCCTTCAACATCATTCCAACGCCGAAATCGGTGATGTATTTCATCCAGTGGGTGAGGAGGAAATTTTTCGGGCAATCGAAGGCCATAAAGAAGGAGCACATGAAGACAATAAGGAAAGTGAAGCAGGCGAGCGAGCGCGACTTCCGATACCAGAGCATAATGCGGAACTTGGTGCGGCGCTATGTGACCGTGCAGCAGCGCAAGGCGGAATCGCAAGGCGTCACCGAGGACGACGTCAACGAGATCAAGCAGGACATCTCGGCGTTCCGCTGCGAGCTCGTCGAAATCCTCAAGAACAGCGGCATGAACACGAGCACGGCGGCAGGCGGAGCGGGCGGCGCCGGCGGCAAGAAGAACCGCCAGAAAGAGCGGCGTCTCATGAAAGGTTTCAATGTCGCGCCATCTATTGGATCGACATCATTAACACCATTGAGTGAACATAGCGGTAGCTTTCCCTTAGACCATCACGGCTCCCATGACTTCTCCGCCCTTAGCGGCCTCTTTGGGCCGGGCATTACGCCTAGAAAGAATCCCGCTCCAAATCCCTTACAGCAGCAGCAACTGCAGCAGGGCAGTCTCTCGACGTCGCAGGGCTCGTTCGGCGAGTCAATCAACCCGATTCACAAGCTCGGGAGGTTTGCGCCCAAGTTCCATTCCAAGCGAAATGGCGGCTCGCACAAGAGAAAATGGGGCACCCTGATAGAGGCAGCGAAATCAGGTAGTGTATCACGATTTATCGGTCGTTCACGATCAGAAGATTCAGTATGCAATTCGCCGCCGCCAAACCTCAATCGCAATGAGTCAGCGAGCAATAGTCCAAATTCAGACGAAGCGGTAACTGAATCACCGACAGATTCCAATCCTAGTCTAGACAAACCCGACGAGCACCATCATCATAGCCACCACCAAAAGCACCACCACTCACAACAACCCGGCGACCATCAAACGTCAAACGTCAATAATAACGATAGTAATGTGCATACTAGTTCTTCCCATAGTAATAATAATAAGAAAGATCACCACCACCATCTGCATATGCCGCATGTGAACCTGAACTTCAGTGCTCTAGCGGCACTCAAGCGCAAGCGAAAAAAATTCTCAAATAGTCGGAATGAAAGTCCCGTGCTAGAACCACCTCCCGAGCATTCATCACCATCATCATCTAGTATTAAAAAGTCGATTAAAAAAACGTTGCAAAGGGCATCTAGTGTTCCGACGCGTTCAACTGTACCTGATAAGCACGAGATCACGCAGCCACGGCACGAGCAGACGCAGAGCCAGGACCAGGCGGATGGATCGACGGAGCAGCAGCCCGATCCGCCGCCCTTGAGCGCCTCAACGACCGAGGAGAGCGTCGCGCCGACCAGCACCGAGCCGCTGCTGAATTTAGCGCGCGGCAACGTGACAATTGCTAGCAACATAAAGTTCGAATTGAATGGACAGCAAGCGCTACCCAATTTGCCTAACATCATACCGCTTCAAGGACATTTGCACCAGCAAGGATGGTTA
Protein: 912 (aa)
MQITFKVVKPNPSTCTCFVSHPNVQQLLASIWYEGLPGFRRKNMALQSLEICRIGIMFPLFSVSYVLAPHSSFGQTMRKPFIKFICHSASYFTFLFLLMLASQRIESVIDFGEEEEQKVGEKELTKRGAAPTFIEWMILSWVSGLIWSEVKQLWDVGLKEYVHDMWNVIDFITNSLYVATVALRVVSYYQVQREMEVDPNAELTPREKWDAIDPLLISEGLFSAGNIFSSLKLVYIFSVNPHLGPLQVSLSRMVTDIIKFFFLYVLVLFAFSSGLNQLLWYYADLEKKRCIDLSSPMMANATNIDTNACLVWRRFANLFETTQTLFWAAFGLIDLESFELDGIKIFTRFWGMLMFGCYSVINIVVLLNLLIAMMNHSYQLISERADTEWKFARSKLWISYFEEGATCPPPFNIIPTPKSVMYFIQWVRRKFFGQSKAIKKEHMKTIRKVKQASERDFRYQSIMRNLVRRYVTVQQRKAESQGVTEDDVNEIKQDISAFRCELVEILKNSGMNTSTAAGGAGGAGGKKNRQKERRLMKGFNVAPSIGSTSLTPLSEHSGSFPLDHHGSHDFSALSGLFGPGITPRKNPAPNPLQQQQLQQGSLSTSQGSFGESINPIHKLGRFAPKFHSKRNGGSHKRKWGTLIEAAKSGSVSRFIGRSRSEDSVCNSPPPNLNRNESASNSPNSDEAVTESPTDSNPSLDKPDEHHHHSHHQKHHHSQQPGDHQTSNVNNNDSNVHTSSSHSNNNKKDHHHHLHMPHVNLNFSALAALKRKRKKFSNSRNESPVLEPPPEHSSPSSSSIKKSIKKTLQRASSVPTRSTVPDKHEITQPRHEQTQSQDQADGSTEQQPDPPPLSASTTEESVAPTSTEPLLNLARGNVTIASNIKFELNGQQALPNLPNIIPLQGHLHQQGWL
| Type | Start | End | Length |
| CDS |
46 |
96 |
51 |
| CDS |
1260 |
1371 |
112 |
| CDS |
1440 |
1562 |
123 |
| CDS |
2179 |
2322 |
144 |
| CDS |
2871 |
3010 |
140 |
| CDS |
3363 |
3443 |
81 |
| CDS |
3518 |
3607 |
90 |
| CDS |
3678 |
3775 |
98 |
| CDS |
4032 |
4142 |
111 |
| CDS |
4211 |
4406 |
196 |
| CDS |
4524 |
4587 |
64 |
| CDS |
5042 |
5172 |
131 |
| CDS |
5261 |
5837 |
577 |
| CDS |
6250 |
6746 |
497 |
| CDS |
7833 |
8153 |
321 |
| intron |
97 |
1259 |
1163 |
| intron |
1372 |
1439 |
68 |
| intron |
1563 |
2178 |
616 |
| intron |
2323 |
2870 |
548 |
| intron |
3011 |
3362 |
352 |
| intron |
3444 |
3517 |
74 |
| intron |
3608 |
3677 |
70 |
| intron |
3776 |
4031 |
256 |
| intron |
4143 |
4210 |
68 |
| intron |
4407 |
4523 |
117 |
| intron |
4588 |
5041 |
454 |
| intron |
5173 |
5260 |
88 |
| intron |
5838 |
6249 |
412 |
| intron |
6747 |
7832 |
1086 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_317008 |
AGAP008435-PA [Anopheles gambiae str. PEST] gb|EAA12444.4| AGAP008435-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR002153 |
Transient receptor potential channel, canonical |
|
| InterPro |
IPR005821 |
Ion transport domain |
|
| InterPro |
IPR004729 |
Transient receptor potential channel |
|
| Gene Ontology(BP) |
GO:0070588 |
calcium ion transmembrane transport |
|
| Gene Ontology(BP) |
GO:0055085 |
transmembrane transport |
|
| Gene Ontology(BP) |
GO:0006811 |
ion transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0005216 |
ion channel activity |
|
| Gene Ontology(MF) |
GO:0005262 |
calcium channel activity |
|
| Pfam |
PF00520.26 |
Ion transport protein |
2e-33 |
| Pfam |
PF08016.7 |
Polycystin cation channel |
9.1e-08 |
| Pfam |
PF08285.6 |
Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) |
0.75 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.03106 |
| Pn.16023 |
| Pn.13670 |
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ005741 |
| P. vanderplanki |
Pv.07325 |
| H. sapiens |
ENSP00000368995 |
| H. sapiens |
ENSP00000348025 |
| D. melanogaster |
FBgn0005614 |
| H. sapiens |
ENSP00000441628 |
| S. invicta |
SI2.2.0_15274 |
| A. gambiae |
AGAP000348 |
| B. mori |
BGIBMGA001085-TA |
| H. sapiens |
ENSP00000273482 |
| S. invicta |
SI2.2.0_00415 |
| M. musculus |
ENSMUSG00000032839 |
| C. quinquefasciatus |
CPIJ001522 |
| H. sapiens |
ENSP00000423866 |
| H. sapiens |
ENSP00000351264 |
| H. sapiens |
ENSP00000330322 |
| H. sapiens |
ENSP00000424854 |
| N. vitripennis |
NV14416-PA |
| S. invicta |
SI2.2.0_04889 |
| H. sapiens |
ENSP00000426870 |
| H. sapiens |
ENSP00000264811 |
| H. sapiens |
ENSP00000368966 |
| H. melpomene |
HMEL016445-PA |
| A. mellifera |
GB11954-PA |
| H. sapiens |
ENSP00000369003 |
| H. sapiens |
ENSP00000353687 |
| P. humanus |
PHUM086850-PA |
| T. castaneum |
TC007028 |
| H. melpomene |
HMEL008448-PA |
| P. vanderplanki |
Pv.00970 |
| H. sapiens |
ENSP00000340913 |
| A. aegypti |
AAEL005437 |
| H. sapiens |
ENSP00000426070 |
| A. aegypti |
AAEL005586 |
| H. sapiens |
ENSP00000369001 |
| H. sapiens |
ENSP00000343672 |
| P. humanus |
PHUM055080-PA |
| M. musculus |
ENSMUSG00000031997 |
| A. gambiae |
AGAP010630 |
| H. sapiens |
ENSP00000367720 |
| B. mori |
BGIBMGA009272-TA |
| N. vitripennis |
NV15626-PA |
| H. sapiens |
ENSP00000426899 |
| P. vanderplanki |
Pv.04681 |
| D. melanogaster |
FBgn0003861 |
| A. mellifera |
GB15944-PA |
| D. plexippus |
DPOGS213744PA |
| D. plexippus |
DPOGS216017PA |
| M. musculus |
ENSMUSG00000027748 |
| H. sapiens |
ENSP00000262839 |
| H. sapiens |
ENSP00000342580 |
| H. sapiens |
ENSP00000347312 |
| H. sapiens |
ENSP00000419313 |
| H. sapiens |
ENSP00000435574 |
| H. sapiens |
ENSP00000421571 |
| H. sapiens |
ENSP00000369027 |
| H. sapiens |
ENSP00000410133 |
| A. aegypti |
AAEL005014 |
| H. sapiens |
ENSP00000414316 |
| N. vitripennis |
NV14344-PA |
| H. sapiens |
ENSP00000435969 |
| D. melanogaster |
FBgn0032593 |
| B. mori |
BGIBMGA009273-TA |
| D. plexippus |
DPOGS213792PA |
| C. quinquefasciatus |
CPIJ001523 |
| A. mellifera |
GB16264-PA |
| M. musculus |
ENSMUSG00000021541 |
| T. castaneum |
TC007033 |
| M. musculus |
ENSMUSG00000041710 |
| C. quinquefasciatus |
CPIJ018599 |
| A. gambiae |
AGAP008435 |
| T. castaneum |
TC007743 |
| M. musculus |
ENSMUSG00000027716 |