MidgeBase gene description page [Pn.09458]
Outline
| Gene ID | Pn.09458 |
| Type | Protein coding gene |
| Scaffold | PnScaf9722 |
| Start | 593 |
| End | 3275 |
| Direction | + |
Sequence
Transcript: 1146 (bp)
ATGGCTCGAGCCGATGAGGTTGTGTTGCCGAAGGACCAGGGACCACTCGGATTCTCGATCATTGGCGGAACTGATCACTCTTGTGTGCCGTTTGGCGGGCGTGATCCCGGAATTTTCATATCACATATTGTTCCCGGCGGCATTGCTGCCCAGTGCGGCAAACTGCGAATGGGTGATCGCATCTTAAGAGTCAATGGAAGCGACGTGACAAGTGCAACGCATCAAGAAGCCGTAATGGAGCTGCTGAGACCGTGCGAAGAAATCAAGCTGACCGTTCAACACGATCCCTTGCCGGCTGGTTTCCAGGAGGTAACAATCGTCAAGGGCGAAGGTGAACGTCTCGGCATGCACATCAAGGGCGGCCTGAAAGGACAGCGCGGTAATCCGCTGGACGCCAACGACGAGGGCGTCTTCATATCAAAAATCAACAGCAGCGGAGCAGTTCGACGTGACGGCCGCTTAAAGGTCGGCATGCGGATACTCGAAGTCAACGGCCAGTCGCTTTTGGGCGCGTCGCACCAGGAGGCAGTCGAGAGCCTGCGTCTGAGCGCGAACCGACTCAATTTGGTCGTGTGCAAAGGCTACGAGAAGTCCGACCTCATCCACGGCATGATCTCATCGGGCACGGGCAGCCGCTTGAGTAGCCGCGCGTCCGAGACGGGCTCGGAGCTGAGCCTCGACCAGGACGACCTCGAGCACTCGACCGTTTTTCAAAACGCGCACGTCGAGCCCATGGAAGAGGTCTTCGAGGAGGAGAAAGCCGAGGAGGCGGCGAACGCAAGTCAGGAGATTGCGCGCCTCGCCAACGAGGTAGCGCTGCTGAGTCAGGCGGACGCGACAGAAAACGCGCTCGTCAAGGCCAAGGAGAAGAGCACGCCCGAAAAGGTGTTGGACATTGTCCGGGCCGCTGAGTCGCTGGCACTCGGCGAAGTCATTCCGCCCAAGTCGCCCGTAGACCACCACGAGACACTCCAGAAGACGACGACCATTGTGATGTCGAAGCACACGCTCAACACGGCTGCCGAGTCGCAGCCTGCACAGGCACCGGCATCTGCACCTGCACCACAGCCACTGAGGCAGCAATCACCGCCACCACCGCAGCAGCAGCAGCAACCGATGCAAACGACGCCGTCACAGGTATGTCGA
Protein: 382 (aa)
MARADEVVLPKDQGPLGFSIIGGTDHSCVPFGGRDPGIFISHIVPGGIAAQCGKLRMGDRILRVNGSDVTSATHQEAVMELLRPCEEIKLTVQHDPLPAGFQEVTIVKGEGERLGMHIKGGLKGQRGNPLDANDEGVFISKINSSGAVRRDGRLKVGMRILEVNGQSLLGASHQEAVESLRLSANRLNLVVCKGYEKSDLIHGMISSGTGSRLSSRASETGSELSLDQDDLEHSTVFQNAHVEPMEEVFEEEKAEEAANASQEIARLANEVALLSQADATENALVKAKEKSTPEKVLDIVRAAESLALGEVIPPKSPVDHHETLQKTTTIVMSKHTLNTAAESQPAQAPASAPAPQPLRQQSPPPPQQQQQPMQTTPSQVCR
| Type | Start | End | Length |
| CDS |
593 |
607 |
15 |
| CDS |
765 |
875 |
111 |
| CDS |
1181 |
1360 |
180 |
| CDS |
2230 |
2808 |
579 |
| CDS |
3012 |
3272 |
261 |
| intron |
608 |
764 |
157 |
| intron |
876 |
1180 |
305 |
| intron |
1361 |
2229 |
869 |
| intron |
2809 |
3011 |
203 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001848126 |
conserved hypothetical protein [Culex quinquefasciatus] gb|EDS27692.1| conserved hypothetical protein [Culex quinquefasciatus] |
1e-119 |
| InterPro |
IPR001478 |
PDZ domain |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF13180.1 |
PDZ domain |
4.7e-10 |
| Pfam |
PF09770.4 |
Topoisomerase II-associated protein PAT1 |
0.18 |
| Pfam |
PF00595.19 |
PDZ domain (Also known as DHR or GLGF) |
1.4e-35 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.10384 |
| Pn.06812 |
Orthologous genes
| Species |
Gene ID |
| S. invicta |
SI2.2.0_06687 |
| H. sapiens |
ENSP00000359925 |
| H. sapiens |
ENSP00000456311 |
| H. melpomene |
HMEL016997-PA |
| P. vanderplanki |
Pv.08034 |
| B. mori |
BGIBMGA006516-TA |
| M. musculus |
ENSMUSG00000032352 |
| B. mori |
BGIBMGA006517-TA |
| D. plexippus |
DPOGS211580PA |
| A. aegypti |
AAEL002340 |
| C. quinquefasciatus |
CPIJ006376 |
| D. melanogaster |
FBgn0263289 |
| H. sapiens |
ENSP00000366756 |
| C. quinquefasciatus |
CPIJ006377 |
| A. aegypti |
AAEL002336 |
| A. gambiae |
AGAP000054 |
| P. humanus |
PHUM127710-PA |
| H. sapiens |
ENSP00000431519 |
| A. mellifera |
GB14945-PA |
| A. mellifera |
GB13159-PA |
| H. sapiens |
ENSP00000349486 |
| H. sapiens |
ENSP00000456561 |
| N. vitripennis |
NV15131-PA |
| H. sapiens |
ENSP00000455629 |
| T. castaneum |
TC011397 |
| D. plexippus |
DPOGS211581PA |
| H. sapiens |
ENSP00000456859 |
| H. sapiens |
ENSP00000322938 |