MidgeBase gene description page [Pn.09415]
Outline
| Gene ID | Pn.09415 |
| Type | Protein coding gene |
| Scaffold | PnScaf9658 |
| Start | 417 |
| End | 3871 |
| Direction | - |
Sequence
Transcript: 1902 (bp)
ATGTTAATGAACTATGGAGTTGTCGACATGATAAGAGGTTTGGGCATTCCCGACCTACCGAATGGTGTCAACGAAACAGCCGGAATGTGTGGCAGTCATCGCAATGCTTATCAAAAATTTAAAGCGCCAGCCTACTCTATCAACAAGGGAACAATGATAACTGTCGCGACTCGTGATTTGTTTGAAGAGGGCTTCCCTCTTGACTTTTCGCTCATGGTTGTGTTGAGAGCGCGTCAAAGATCGCAACGGGTTCCCGTCTTTTCGATTTACACCTCAGAAAGCGAGGAATCTTTAGTCCTTTACGTCGGCCAAGAGATTTCGTTGCTCTACCAAGACGACTCGGTCATTGACGACAACTTTTTGAGCTTTGAAGCTGACACGAATGATTTAAAGTGGCATCGAATCGCGTTGAGTGTGAAAGGAGATTCGATCACACTCATTTTCGATTGCGACAAGCAAATCACAAAGAAAATCTCGCGATCAGTGAGTTCGGCGATCAGCAATGAGGGACTCATCATGATGGGCGTGCAGTTGGATGAGGAGGAGGAATACTTTATCGGAGATCTGCAGCTTCTGACTTTTACAAACGTACCAGATTCTGCCTATGAACTCTGCTCAGTTTTTTCGCCCAACTGTGCTGAGGGTACGTATGAGGAGCAAACTATCGTGGAGACAACAACTCGCAAGAATTCTTCAAAATCGAGAAAGAGCAAGTCGAGCAAGAGCAGCAAGACACGAAAGTCGCGAGACAGAACGATGATCAGGTTGAACGACGCCACACAGGATAACTCGATTGAGTCCGTGATCGGATTTAATGGCGAAGATGATTACTATGACTCCCTCAACTCGGGCAACGAAGACGAGGTCTACAGACTTGATACGACACTCAGACCGACGGTGGTGTTGGAGAGCGATAGAAATCGCGAGGAAACTTATGTCGAGGAGAACTACTATAATCCCGAGGTAAACTACAATTTGGAAGAGTATGACAGTGGAAGCGACAGCGGCAATTACACGACCATCATCAATGGTGTTAAGCTGAAGTCACTGCCCGGACCGAGGGGAATTGTTGGGCCGAAGGGTGAGAAGGGAGAGCCTGGACCAAAAGGCGACGATGGAAGGGACGGTCTAGATGGAATTTCAGGAGCTCCCGGAGCGGCCGGCCATGTTTTTATAATCCCGCTGGGGCAAAGTGGCAACGAAAAAGGACCTGACACTCAAGCTGAAGCCTTCAGACAAATGCTCGCTCAACACATGCTCGCGATGAAAGGGCCTGAGGGGCCTATGGGAATGACTGGCTTGCCTGGACCAGTGGGAAAACCCGGTGAACAAGGAATAAAAGGCGATGTTGGTGATCCTGGAGAGCAGGGTCCAATGGGCATGCGAGGCTTGATGGGACTACCCGGGAGAGAAGGAAAAAGAGGAAGAGCTGGAAGAGATGGCGAGAGAGGTGTTGCCGGCGCACAAGGATTGAAGGGCGAGCCGGGAGTGGCAGGCTCCTTGGGTCTCCCGGGCGAAAAAGGTGACCGAGGACGATCTGGCCTCGTTGGTGAAAAGGGCAACAAAGGTGCCGAAGGTGTTCATGGTGATGATGGTCCACAGGGGTTACAAGGCGCTCCAGGAGAAATCGGTCCTCGAGGATTCACAGGAAGCAGAGGTTTGCCCGGCCCAATTGGAGTTCCAGGCATTCCCGGCTCCGAAGGTCCTCCAGGAAGTAAAGGAAATGCGGGTTTGCCGGGTCCGATCGGCAATCCAGGACCCATGGGAATGAAGGGCCACCAGGGAATTCAAGGACCAATGGGAATGCAAGGTGGACCTGGTCTTCCTGGACCTCCTGGAAAAACTGGATACCCAGCACTGGTCAAAAAGGAGAAGCTGGTCTACAGGGACCACCTGGTCAAA
Protein: 634 (aa)
MLMNYGVVDMIRGLGIPDLPNGVNETAGMCGSHRNAYQKFKAPAYSINKGTMITVATRDLFEEGFPLDFSLMVVLRARQRSQRVPVFSIYTSESEESLVLYVGQEISLLYQDDSVIDDNFLSFEADTNDLKWHRIALSVKGDSITLIFDCDKQITKKISRSVSSAISNEGLIMMGVQLDEEEEYFIGDLQLLTFTNVPDSAYELCSVFSPNCAEGTYEEQTIVETTTRKNSSKSRKSKSSKSSKTRKSRDRTMIRLNDATQDNSIESVIGFNGEDDYYDSLNSGNEDEVYRLDTTLRPTVVLESDRNREETYVEENYYNPEVNYNLEEYDSGSDSGNYTTIINGVKLKSLPGPRGIVGPKGEKGEPGPKGDDGRDGLDGISGAPGAAGHVFIIPLGQSGNEKGPDTQAEAFRQMLAQHMLAMKGPEGPMGMTGLPGPVGKPGEQGIKGDVGDPGEQGPMGMRGLMGLPGREGKRGRAGRDGERGVAGAQGLKGEPGVAGSLGLPGEKGDRGRSGLVGEKGNKGAEGVHGDDGPQGLQGAPGEIGPRGFTGSRGLPGPIGVPGIPGSEGPPGSKGNAGLPGPIGNPGPMGMKGHQGIQGPMGMQGGPGLPGPPGKTGYPALVKKEKLVYRDHLVK
| Type | Start | End | Length |
| CDS |
420 |
433 |
14 |
| CDS |
496 |
528 |
33 |
| CDS |
741 |
766 |
26 |
| CDS |
831 |
903 |
73 |
| CDS |
967 |
1007 |
41 |
| CDS |
1080 |
1108 |
29 |
| CDS |
1159 |
1196 |
38 |
| CDS |
1256 |
1301 |
46 |
| CDS |
1366 |
1410 |
45 |
| CDS |
1463 |
1550 |
88 |
| CDS |
1609 |
1654 |
46 |
| CDS |
1720 |
1800 |
81 |
| CDS |
1864 |
1891 |
28 |
| CDS |
1950 |
1982 |
33 |
| CDS |
2045 |
2178 |
134 |
| CDS |
2243 |
2308 |
66 |
| CDS |
2538 |
3441 |
904 |
| CDS |
3514 |
3677 |
164 |
| CDS |
3859 |
3871 |
13 |
| intron |
434 |
495 |
62 |
| intron |
529 |
740 |
212 |
| intron |
767 |
830 |
64 |
| intron |
904 |
966 |
63 |
| intron |
1008 |
1079 |
72 |
| intron |
1109 |
1158 |
50 |
| intron |
1197 |
1255 |
59 |
| intron |
1302 |
1365 |
64 |
| intron |
1411 |
1462 |
52 |
| intron |
1551 |
1608 |
58 |
| intron |
1655 |
1719 |
65 |
| intron |
1801 |
1863 |
63 |
| intron |
1892 |
1949 |
58 |
| intron |
1983 |
2044 |
62 |
| intron |
2179 |
2242 |
64 |
| intron |
2309 |
2537 |
229 |
| intron |
3442 |
3513 |
72 |
| intron |
3678 |
3858 |
181 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001843460 |
collagen alpha chain [Culex quinquefasciatus] gb|EDS32619.1| collagen alpha chain [Culex quinquefasciatus] |
1e-107 |
| InterPro |
IPR008985 |
Concanavalin A-like lectin/glucanase |
|
| InterPro |
IPR001791 |
Laminin G domain |
|
| InterPro |
IPR008160 |
Collagen triple helix repeat |
|
| InterPro |
IPR013320 |
Concanavalin A-like lectin/glucanase, subgroup |
|
| Pfam |
PF01391.13 |
Collagen triple helix repeat (20 copies) |
8.5e-39 |
| Pfam |
PF02210.19 |
Laminin G domain |
9.2e-05 |
| Pfam |
PF13385.1 |
Concanavalin A-like lectin/glucanases superfamily |
0.055 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC002063 |
| P. vanderplanki |
Pv.04057 |