MidgeBase gene description page [Pn.09413]
Outline
| Gene ID | Pn.09413 |
| Type | Protein coding gene |
| Scaffold | PnScaf9652 |
| Start | 381 |
| End | 1641 |
| Direction | - |
Sequence
Transcript: 1200 (bp)
ATGAGTTTTATTCCGCAGAAACTTGGCGAGAGGCTGGGCTTTAGGAAGCAGCCGAGAGGCTTCGAAACTAAGCAGATTCGAGCTGGCCAGGAGCCCGAGCAGTGGAACTCACGTGCCGTCATACCGCCAATCGTGACCTCGGCCACCTACTCGCAGCATGGACCGAACGAGGACGTTGGCTTCCGCTACAGCCGCTACAAAAACCCAACGCGAAACGCTCTCGAGCAGTGCCTGGCCGCGCTCGACGACGCGAAATATGCCGTAGCATTTTCGGCAGGCATCGGCACTCTGACGGCTCTCATGAGCATGTTCGCTTCTGGTGACGAAATCGTCACGAGCAGGGCCTTCTATGCCGGCAATTTTAAGGTGCACGACGTGTTCGAGAAGCTCGGAGTGGTCGTGACGTACATCGATTTCACGGACATGCGAAACTTGCAGAAGGCGCTGAACGAGCGCACCAAAATGGTCTTCATCGAGAGTCCCATGAATCCGTCGATGACCGTCCTCGACATCAAGGCGATTGCGGACGAGGTGCACAGCAAGTCGTCGGCCTTCTTGGTGGTCGACAACACTTTCTTGACGCCATACTTCCAGCGACCGCTCGAGCTCGGCGCCGACTTGGTCACCTACTCGCTGAGCAAGTTCATCGGTGGGCATTCTGACATCGTCGGCGGCTCTATCGCGACCAACAGCGAAGAGTTGTACGAAAAAGTAAAAGCTTATCAAATCGCCATCGGAGTAATCGCGTCGCCATTCGAGAGCTATCTTGCTAATCGCAGCCTGAGGACCTTATCAGTGCGCATGGAGCGCCACTTCGAGAACTCGTACGCGGTCGCAAAGTTCCTCGAGGCGCACGAGAAAATCGAAAAGGTGAATCATCCGGCGCTCGAGTCGCACGAGGGCCATGAAGTGTCGAAGAAGCAGGCGTACGGGCACTCTGGCATCATGTCGTTCCTCATCCGAGACGGATCGCTCGAGATGTCGAAGCTGTTCTTCAAGTCGCTGCAGCTGGTGACGGTGGGCGAGAGCTTGGGCGGAAGTGAAACGCTCGCGTCCTTTCCCTGGATGATGACGCACGGCTACCTCAAGGACGAGGAGAAGATCGCTGCCGGCGTCACGGCGAACCTGATCAGAATTTCGATCGGGCTCGAGGACGTCCGAGACATCATCGACGATCTCGAGAATGCACTGAAGAGTGTT
Protein: 400 (aa)
MSFIPQKLGERLGFRKQPRGFETKQIRAGQEPEQWNSRAVIPPIVTSATYSQHGPNEDVGFRYSRYKNPTRNALEQCLAALDDAKYAVAFSAGIGTLTALMSMFASGDEIVTSRAFYAGNFKVHDVFEKLGVVVTYIDFTDMRNLQKALNERTKMVFIESPMNPSMTVLDIKAIADEVHSKSSAFLVVDNTFLTPYFQRPLELGADLVTYSLSKFIGGHSDIVGGSIATNSEELYEKVKAYQIAIGVIASPFESYLANRSLRTLSVRMERHFENSYAVAKFLEAHEKIEKVNHPALESHEGHEVSKKQAYGHSGIMSFLIRDGSLEMSKLFFKSLQLVTVGESLGGSETLASFPWMMTHGYLKDEEKIAAGVTANLIRISIGLEDVRDIIDDLENALKSV
| Type | Start | End | Length |
| CDS |
384 |
1470 |
1087 |
| CDS |
1529 |
1641 |
113 |
| intron |
1471 |
1528 |
58 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001848094 |
cystathionine gamma-lyase [Culex quinquefasciatus] gb|EDS27616.1| cystathionine gamma-lyase [Culex quinquefasciatus] |
1e-119 |
| InterPro |
IPR015424 |
Pyridoxal phosphate-dependent transferase, major domain |
|
| InterPro |
IPR000277 |
Cys/Met metabolism, pyridoxal phosphate-dependent enzyme |
|
| InterPro |
IPR015422 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 |
|
| InterPro |
IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
|
| Gene Ontology(BP) |
GO:0006520 |
cellular amino acid metabolic process |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0030170 |
pyridoxal phosphate binding |
|
| Pfam |
PF03841.8 |
L-seryl-tRNA selenium transferase |
2.8e-05 |
| Pfam |
PF00155.16 |
Aminotransferase class I and II |
4.8e-11 |
| Pfam |
PF01041.12 |
DegT/DnrJ/EryC1/StrS aminotransferase family |
4.2e-05 |
| Pfam |
PF01053.15 |
Cys/Met metabolism PLP-dependent enzyme |
1.9e-128 |
| Pfam |
PF02347.11 |
Glycine cleavage system P-protein |
0.08 |
| Pfam |
PF00266.14 |
Aminotransferase class-V |
9.1e-10 |
| Pfam |
PF06838.6 |
Aluminium resistance protein |
2.2e-07 |
| Pfam |
PF08885.6 |
GSCFA family |
0.023 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL004059 |
| D. plexippus |
DPOGS215780PA |
| N. vitripennis |
NV14054-PA |
| B. mori |
BGIBMGA003656-TA |
| H. sapiens |
ENSP00000413407 |
| D. melanogaster |
FBgn0000566 |
| P. vanderplanki |
Pv.17554 |
| H. melpomene |
HMEL006533-PB |
| P. vanderplanki |
Pv.03709 |
| H. sapiens |
ENSP00000359976 |
| P. humanus |
PHUM257250-PA |
| T. castaneum |
TC012563 |
| S. invicta |
SI2.2.0_00662 |
| N. vitripennis |
NV13252-PA |
| P. vanderplanki |
Pv.01336 |
| H. sapiens |
ENSP00000311554 |
| M. musculus |
ENSMUSG00000028179 |
| C. quinquefasciatus |
CPIJ006619 |
| C. quinquefasciatus |
CPIJ003148 |
| A. gambiae |
AGAP011172 |
| A. mellifera |
GB15881-PA |