MidgeBase gene description page [Pn.09380]
Outline
| Gene ID | Pn.09380 |
| Type | Protein coding gene |
| Scaffold | PnScaf9601 |
| Start | 3329 |
| End | 4705 |
| Direction | - |
Sequence
Transcript: 1374 (bp)
ATGTCTTGGCCGTCGAACGTTGGCATATTGGGAATAGAATTAGTTTTTCCCTCGCTCTTTGTCGATCAAACGGAACTGGAGCAGTTCGATGGCGTTTCAGAAGGAAAATACACCATCGGACTGGGGCAGAGTCGCATGGGATTCTGCACTGATCGCGAGGACATCAACTCACTGTGTCTCACGGTCGTAAGCAATCTCTTGAAGCGCTACAATGTGCAGCCAAAGGACATCGGTCGTCTGGAAGTGGGAACGGAGACAATAATCGACAAATCAAAGTCTGTCAAGTCGGTGCTGATGCAGCTTTTCGAGCCGTTCGGTGCTTGCGACTTGGAAGGCATTGACACCACAAATGCCTGCTACGGCGGAACTGCAGCTCTTTTCAATGCCGTTAATTGGGTTGAGTCATCGAGTTATGACGGTCGCTTGGCGCTTGTTGTGTGCGGAGATATCGCGGTGTATGCCAAGGGCTCTGCTCGTCCAACGGGCGGTGCCGGTGCGATCGCGATGCTCGTCGGCCCCGACGCGCCACTCGTCCTGGACAGAGGCGTTCGAGCGACTTACATGAAGCACGCATACGATTTCTACAAGCCCGACTTGACCTCGGAGTTTCCAGTCGTCGACGGAAAATTGTCAATACAGTGCTACTTGAGCGCCCTGGACAATTGCTACAGATTGTATCGCGAAAAATATCAGCGACAACATCCAGACGCAAAAGTCGTCGGGCTAGAGCACTTCGATGCCCTCGTCTTCCACACGCCGTACTGCAAGCTCGTTCAAAAGTCGTTAGCGCGCATTAGTCTGAATGATTTTCTGCTCACATCTGATCCGGAAAAGAGGAAGGAAGCTTATCCGTCGTTTTACGAAAAGTACGATACAATTAAGCTCGAGGACACGTACTTCGATCGAGACGTCGAGAAAATCTTTCTCGACTATTCGAAGGATACATTCAATAAGAAAACCAAGCCGTCGCTCTTCCTTGCCAATCAAGTCGGAAATATGTACACGCCGTCAGTGTACTCCGGCTTGGTTTCATTACTCGTGAGCGTCGACGAAGATGTAAACAAATTACTCGGTAGACATATTGGCGTTTTCTCTTACGGCTCGGGCTTAGCCTCAACGATGTACTCAATTAGCTTTACAAATGACTCCGCAAAACTCCAAGCGCTCTTGGACAAGCTCTCGTACGTCAAGCCGCTGCTTGCTCAAAGAACAAAAATCTCACCGCAAGAATTCACCGAGTTGATGGAGGTGCGCGTTCACAACTCACATCGCACCAGTTTCGAGCCGAGCGGATCGGTCGAGAGGCTGTTTCCGGGTACTTACTACTTGAAGTATGTCGATGATATGCACCGACGAACTTACGAGAAGCGTGAA
Protein: 458 (aa)
MSWPSNVGILGIELVFPSLFVDQTELEQFDGVSEGKYTIGLGQSRMGFCTDREDINSLCLTVVSNLLKRYNVQPKDIGRLEVGTETIIDKSKSVKSVLMQLFEPFGACDLEGIDTTNACYGGTAALFNAVNWVESSSYDGRLALVVCGDIAVYAKGSARPTGGAGAIAMLVGPDAPLVLDRGVRATYMKHAYDFYKPDLTSEFPVVDGKLSIQCYLSALDNCYRLYREKYQRQHPDAKVVGLEHFDALVFHTPYCKLVQKSLARISLNDFLLTSDPEKRKEAYPSFYEKYDTIKLEDTYFDRDVEKIFLDYSKDTFNKKTKPSLFLANQVGNMYTPSVYSGLVSLLVSVDEDVNKLLGRHIGVFSYGSGLASTMYSISFTNDSAKLQALLDKLSYVKPLLAQRTKISPQEFTELMEVRVHNSHRTSFEPSGSVERLFPGTYYLKYVDDMHRRTYEKRE
| Type | Start | End | Length |
| CDS |
3332 |
4705 |
1374 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001843333 |
hydroxymethylglutaryl-CoA synthase 1 [Culex quinquefasciatus] gb|EDS32196.1| hydroxymethylglutaryl-CoA synthase 1 [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR013746 |
Hydroxymethylglutaryl-coenzyme A synthase C-terminal |
|
| InterPro |
IPR016039 |
Thiolase-like |
|
| InterPro |
IPR013528 |
Hydroxymethylglutaryl-coenzyme A synthase, N-terminal |
|
| InterPro |
IPR010122 |
Hydroxymethylglutaryl-CoA synthase, eukaryotic |
|
| InterPro |
IPR016038 |
Thiolase-like, subgroup |
|
| Gene Ontology(BP) |
GO:0008299 |
isoprenoid biosynthetic process |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0004421 |
hydroxymethylglutaryl-CoA synthase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF01154.12 |
Hydroxymethylglutaryl-coenzyme A synthase N terminal |
2.8e-94 |
| Pfam |
PF08545.5 |
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III |
0.00046 |
| Pfam |
PF08540.5 |
Hydroxymethylglutaryl-coenzyme A synthase C terminal |
3.9e-108 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000322706 |
| M. musculus |
ENSMUSG00000027875 |
| H. sapiens |
ENSP00000358414 |
| N. vitripennis |
NV16179-PA |
| H. sapiens |
ENSP00000399402 |
| B. mori |
BGIBMGA004001-TA |
| S. invicta |
SI2.2.0_05768 |
| C. quinquefasciatus |
CPIJ002065 |
| H. sapiens |
ENSP00000439495 |
| A. aegypti |
AAEL005201 |
| A. mellifera |
GB12497-PA |
| P. humanus |
PHUM544670-PA |
| D. melanogaster |
FBgn0010611 |
| M. musculus |
ENSMUSG00000093930 |
| P. vanderplanki |
Pv.10011 |
| T. castaneum |
TC009172 |
| D. plexippus |
DPOGS214377PA |
| H. melpomene |
HMEL005451-PA |
| A. gambiae |
AGAP005847 |