MidgeBase gene description page [Pn.09352]
Outline
| Gene ID | Pn.09352 |
| Type | Protein coding gene |
| Scaffold | PnScaf9520 |
| Start | 3735 |
| End | 6077 |
| Direction | + |
Sequence
Transcript: 1230 (bp)
ATGCCGCCAAACAACTTTTTAGTGCCCGCATCGACGACAAATGGAACGGAGGACGTTCCCATAAAGAGTGAGGAGGGGCAGCACGAGAATGAGCCAACTATTGGACTGCTGAATCGAAAGAGCAAAAACGTGCTAAACGCGGCCGAGCAGGTGAAGAGCGATGTCGACATCAACGGAAACTGCGTCGCCGTCGAGAAGAGTGCGAGTCAGGATGACGACAGCAATACGAGCGAATACAAGATCGAGCCAGCCTGGTTCAACATCATCGGCTTCGTCTTCCTGCACTACGGTTTCTTCGTGGGACTCACGCTCCTGAGGCCCAACGGTCTCTTCCTATTCACGTTCATTTGGGGAATATTTAGCGGCTACGGAATCACGGCCGGAGCCCATCGCCTGTGGGCGCACGGCGCCTACAAAGCGAACGTTCCGCTGCGGCTTTTCCTCACCTTTTGGCAGACGGTCGCCTTTCAGAACAGCATCTACGAGTGGACGCGCGACCACCGAGTGCACCACAAGTTCACCGACTCCAACGCCGATCCGCACAACGCGAGCCGCGGCTTCTTCTTCTCGCACATCGGCTGGCTCATGTGCAAGAAGCACCCGGACGTGAAGAAGTTCGGCAAGAAGGTCGACATGAGCGACCTCGAGCGCGACCCAATCGTCATGTTCCAGCATCGCTTCTACCTCCTCCTCATGCCGATCTGCTGCTTCGTCATCCCGACCGCCATTCCGATGTCGTGGGGCGTGTCCTTTCACGACGCCACCTTCATGAACATCCTCCGCTACATGACGGTGCTGCACTTCACGTGGCTCGTCAACTCGTACGCGCACATTTGGGGCAACAAGCCGTACGATCAGTTCATCAAGCCCACCGACAGCTACACCGTGTCGATGCTTGCATTTGGCGAAGGCTGGCACAACTATCACCACGTCTTTCCCTACGACTACAAGACGTCCGAGCACGGCAAGTACTGGTGCAATTACACGACCGGATTTCTCGACTTCATGGCGTGGCTCGGCTGGGCGACTGACTTGAAGACGGTGAGCGCTGAAATCGTCAGAAAACGCTGCCTTCGAACTGGCGACGGCAGCCACCATTACAACCAGGAGACTCAGCAGCAGACGAGCGAGAAGGAGGCAGAGCACGAGGAACACGTGTGGGGATGGCAGGACAACATGATGTCCGAGGAGGAGAAGCGTGATGTGACCATTTTTCACAAGAGTTTGGCA
Protein: 410 (aa)
MPPNNFLVPASTTNGTEDVPIKSEEGQHENEPTIGLLNRKSKNVLNAAEQVKSDVDINGNCVAVEKSASQDDDSNTSEYKIEPAWFNIIGFVFLHYGFFVGLTLLRPNGLFLFTFIWGIFSGYGITAGAHRLWAHGAYKANVPLRLFLTFWQTVAFQNSIYEWTRDHRVHHKFTDSNADPHNASRGFFFSHIGWLMCKKHPDVKKFGKKVDMSDLERDPIVMFQHRFYLLLMPICCFVIPTAIPMSWGVSFHDATFMNILRYMTVLHFTWLVNSYAHIWGNKPYDQFIKPTDSYTVSMLAFGEGWHNYHHVFPYDYKTSEHGKYWCNYTTGFLDFMAWLGWATDLKTVSAEIVRKRCLRTGDGSHHYNQETQQQTSEKEAEHEEHVWGWQDNMMSEEEKRDVTIFHKSLA
| Type | Start | End | Length |
| CDS |
3735 |
3848 |
114 |
| CDS |
4687 |
4912 |
226 |
| CDS |
4971 |
5424 |
454 |
| CDS |
5493 |
5608 |
116 |
| CDS |
5664 |
5771 |
108 |
| CDS |
5863 |
6074 |
212 |
| intron |
3849 |
4686 |
838 |
| intron |
4913 |
4970 |
58 |
| intron |
5425 |
5492 |
68 |
| intron |
5609 |
5663 |
55 |
| intron |
5772 |
5862 |
91 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_311704 |
AGAP003418-PA [Anopheles gambiae str. PEST] gb|EAA07365.5| AGAP003418-PA [Anopheles gambiae str. PEST] |
1e-111 |
| InterPro |
IPR015876 |
Fatty acid desaturase, type 1, core |
|
| InterPro |
IPR005804 |
Fatty acid desaturase, type 1 |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(BP) |
GO:0006629 |
lipid metabolic process |
|
| Gene Ontology(MF) |
GO:0016717 |
oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water |
|
| Pfam |
PF00487.19 |
Fatty acid desaturase |
1.8e-12 |
| Pfam |
PF12084.3 |
Protein of unknown function (DUF3561) |
1.5 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.01079 |