MidgeBase gene description page [Pn.09350]
Outline
| Gene ID | Pn.09350 |
| Type | Protein coding gene |
| Scaffold | PnScaf9513 |
| Start | 3329 |
| End | 4505 |
| Direction | - |
Sequence
Transcript: 1119 (bp)
ATGTCGACCTACGGCCGCCTCTTCCGACCCGACAATTTCGTGTTCGGACAGTCTGGGGCGGGCAACAACTGGGCCAAGGGCCACTACACGGAGGGCGCGGAGCTGGTGGACTCGGTGCTGGACGTCGTCCGGAAGGAGACGGAAGGCTGCGACTGTCTGCAGGGCTTCCAGCTCACGCACTCGCTGGGCGGCGGCACCGGCTCGGGCATGGGCACGCTGCTGATCTCGAAGATCCGCGAGGAATACCCCGACCGCATCATGAACACCTTCTCGGTGGTGCCGTCGCCAAAAGTGTCGGACACGGTCGTCGAACCGTACAACTCGACGCTCAGCATCCACCAGCTCGTGGAGAACACGGACGAGACGTACTGCATTGATAACGAGGCACTCTACGACATCTGCTTCCGAACGCTGAAGCTCGTGACGCCGACGTATGGCGACCTCAACCATCTCGTGTCGCTGACGATGAGCGGCGTCACCACCTGCTTGCGCTTCCCCGGGCAACTCAACGCCGATCTGCGCAAGCTAGCCGTCAACATGGTTCCCTTCCCGCGGCTGCACTTCTTCATGCCGGGCTTTGCGCCGCTTGTTGCGCGCGGCTCGCAACAGTACCGGTCGCTGTCGGTGCCGGAGCTGGCGCAGCAAATGTTCGACACGAAAAACATGATGGCCGCTTGCGACCCGCGCCACGGCAGATATCTCACGGTGGCGGCAGTGTTCCGCGGACGAATGTCGATGAAGGAGATTGACGAGCAGATGCTGTCGATCCAGAACAAGAACAGCAGCTACTTCGTCGAGTGGATCCCGAACAACGTGAAGACGGCCGTCTGTGATATTCCGCCGAAGGGATTGAAAATGAGCGCGACTTTCATCGGAAACTCGACCGCAATTCAGGAGCTCTTCCGACGCATTTCCGAGCAGTTTACGTGCATGTTCCGGCGCAAGGCTTTCCTCCACTGGTACACGAGCGAGGGCATGGACGAGATGGAGTTCACCGAGGCCGAGAGCAACATGAACGACCTGATATCGGAGTACCAGCAGTACCAGGAGGCCACCGCCGACGAGTACGCCGAGTTTGACGAGTCGAAGCTCCTGCGAACGGAGAAGGAGTTCGACGGC
Protein: 373 (aa)
MSTYGRLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKETEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNSTLSIHQLVENTDETYCIDNEALYDICFRTLKLVTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLVARGSQQYRSLSVPELAQQMFDTKNMMAACDPRHGRYLTVAAVFRGRMSMKEIDEQMLSIQNKNSSYFVEWIPNNVKTAVCDIPPKGLKMSATFIGNSTAIQELFRRISEQFTCMFRRKAFLHWYTSEGMDEMEFTEAESNMNDLISEYQQYQEATADEYAEFDESKLLRTEKEFDG
| Type | Start | End | Length |
| CDS |
3332 |
4372 |
1041 |
| CDS |
4428 |
4505 |
78 |
| intron |
4373 |
4427 |
55 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ADN07431 |
GH12877p [Drosophila melanogaster] |
0.0 |
| InterPro |
IPR002453 |
Beta tubulin |
|
| InterPro |
IPR000217 |
Tubulin |
|
| InterPro |
IPR017975 |
Tubulin, conserved site |
|
| InterPro |
IPR003008 |
Tubulin/FtsZ, GTPase domain |
|
| InterPro |
IPR023123 |
Tubulin, C-terminal |
|
| InterPro |
IPR018316 |
Tubulin/FtsZ, 2-layer sandwich domain |
|
| InterPro |
IPR008280 |
Tubulin/FtsZ, C-terminal |
|
| Gene Ontology(BP) |
GO:0051258 |
protein polymerization |
|
| Gene Ontology(BP) |
GO:0007018 |
microtubule-based movement |
|
| Gene Ontology(BP) |
GO:0006184 |
GTP catabolic process |
|
| Gene Ontology(BP) |
GO:0007017 |
microtubule-based process |
|
| Gene Ontology(CC) |
GO:0005874 |
microtubule |
|
| Gene Ontology(CC) |
GO:0043234 |
protein complex |
|
| Gene Ontology(MF) |
GO:0005198 |
structural molecule activity |
|
| Gene Ontology(MF) |
GO:0005525 |
GTP binding |
|
| Gene Ontology(MF) |
GO:0003924 |
GTPase activity |
|
| Pfam |
PF00091.20 |
Tubulin/FtsZ family, GTPase domain |
3.7e-47 |
| Pfam |
PF03953.12 |
Tubulin C-terminal domain |
6.6e-50 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.10012 |
| Pn.04033 |
| Pn.04034 |
| Pn.01588 |
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000394124 |
| H. sapiens |
ENSP00000448524 |
| C. quinquefasciatus |
CPIJ012634 |
| H. sapiens |
ENSP00000449961 |
| H. melpomene |
HMEL016365-PA |
| H. sapiens |
ENSP00000379668 |
| H. sapiens |
ENSP00000414479 |
| B. mori |
BGIBMGA009133-TA |
| C. quinquefasciatus |
CPIJ003635 |
| H. sapiens |
ENSP00000400663 |
| T. castaneum |
TC011969 |
| M. musculus |
ENSMUSG00000001473 |
| H. sapiens |
ENSP00000320295 |
| H. sapiens |
ENSP00000448087 |
| H. sapiens |
ENSP00000391515 |
| H. melpomene |
HMEL006280-PA |
| A. mellifera |
GB14126-PA |
| H. sapiens |
ENSP00000416480 |
| P. vanderplanki |
Pv.01613 |
| B. mori |
BGIBMGA009131-TA |
| P. humanus |
PHUM037830-PA |
| H. melpomene |
HMEL006279-PA |
| H. melpomene |
HMEL017624-PA |
| H. sapiens |
ENSP00000302777 |
| M. musculus |
ENSMUSG00000062380 |
| H. sapiens |
ENSP00000459638 |
| P. humanus |
PHUM244070-PA |
| P. humanus |
PHUM611170-PA |
| P. vanderplanki |
Pv.03291 |
| H. melpomene |
HMEL016371-PA |
| D. plexippus |
DPOGS202417PA |
| H. sapiens |
ENSP00000418077 |
| A. aegypti |
AAEL002848 |
| A. mellifera |
GB13049-PA |
| H. sapiens |
ENSP00000443590 |
| H. sapiens |
ENSP00000393340 |
| P. vanderplanki |
Pv.12938 |
| H. sapiens |
ENSP00000392914 |
| H. sapiens |
ENSP00000449339 |
| H. sapiens |
ENSP00000413589 |
| B. mori |
BGIBMGA009132-TA |
| B. mori |
BGIBMGA004603-TA |
| H. sapiens |
ENSP00000403213 |
| P. humanus |
PHUM003090-PA |
| P. humanus |
PHUM131840-PA |
| T. castaneum |
TC009035 |
| H. sapiens |
ENSP00000403895 |
| H. sapiens |
ENSP00000365578 |
| H. sapiens |
ENSP00000448960 |
| H. sapiens |
ENSP00000309431 |
| D. plexippus |
DPOGS209862PA |
| D. plexippus |
DPOGS213385PA |
| H. sapiens |
ENSP00000383374 |
| S. invicta |
SI2.2.0_02386 |
| H. sapiens |
ENSP00000399155 |
| D. plexippus |
DPOGS215440PA |
| A. gambiae |
AGAP010929 |
| S. invicta |
SI2.2.0_08538 |
| N. vitripennis |
NV11375-PA |
| H. sapiens |
ENSP00000447101 |
| H. sapiens |
ENSP00000468777 |
| M. musculus |
ENSMUSG00000095159 |
| B. mori |
BGIBMGA003442-TA |
| P. vanderplanki |
Pv.01614 |
| H. sapiens |
ENSP00000446548 |
| M. musculus |
ENSMUSG00000016255 |
| D. plexippus |
DPOGS200512PA |
| H. sapiens |
ENSP00000447048 |
| B. mori |
BGIBMGA003296-TA |
| H. melpomene |
HMEL022608-PA |
| M. musculus |
ENSMUSG00000058672 |
| P. vanderplanki |
Pv.06617 |
| H. sapiens |
ENSP00000448321 |
| H. sapiens |
ENSP00000449827 |
| T. castaneum |
TC009590 |
| H. sapiens |
ENSP00000259818 |
| A. gambiae |
AGAP005293 |
| H. sapiens |
ENSP00000217133 |
| D. melanogaster |
FBgn0003889 |
| H. sapiens |
ENSP00000369703 |
| D. plexippus |
DPOGS202402PA |
| M. musculus |
ENSMUSG00000045136 |
| C. quinquefasciatus |
CPIJ003260 |
| D. melanogaster |
FBgn0003887 |
| M. musculus |
ENSMUSG00000062591 |
| M. musculus |
ENSMUSG00000036752 |
| H. sapiens |
ENSP00000328808 |
| D. plexippus |
DPOGS213386PA |
| H. melpomene |
HMEL002897-PA |
| T. castaneum |
TC010829 |
| C. quinquefasciatus |
CPIJ000407 |
| N. vitripennis |
NV19237-PA |
| H. sapiens |
ENSP00000406981 |
| B. mori |
BGIBMGA001707-TA |
| A. mellifera |
GB10275-PA |
| H. sapiens |
ENSP00000448523 |
| N. vitripennis |
NV17569-PA |
| H. sapiens |
ENSP00000318697 |
| H. sapiens |
ENSP00000403868 |
| A. aegypti |
AAEL005084 |
| H. sapiens |
ENSP00000450186 |
| H. sapiens |
ENSP00000341289 |
| P. humanus |
PHUM373360-PA |
| H. melpomene |
HMEL016368-PA |
| H. sapiens |
ENSP00000379672 |
| P. vanderplanki |
Pv.13007 |
| H. sapiens |
ENSP00000446747 |
| N. vitripennis |
NV18349-PA |
| D. plexippus |
DPOGS202403PA |
| M. musculus |
ENSMUSG00000001525 |
| H. sapiens |
ENSP00000264071 |
| P. vanderplanki |
Pv.14739 |
| H. sapiens |
ENSP00000447729 |
| A. gambiae |
AGAP004914 |
| B. mori |
BGIBMGA004542-TA |
| H. sapiens |
ENSP00000451560 |
| H. sapiens |
ENSP00000409249 |
| T. castaneum |
TC009589 |
| P. vanderplanki |
Pv.13010 |
| A. gambiae |
AGAP010510 |
| H. sapiens |
ENSP00000447721 |
| H. sapiens |
ENSP00000383378 |
| A. mellifera |
GB11920-PA |
| H. melpomene |
HMEL007417-PA |
| H. sapiens |
ENSP00000407673 |
| H. sapiens |
ENSP00000451617 |
| H. sapiens |
ENSP00000394841 |
| N. vitripennis |
NV11364-PA |
| S. invicta |
SI2.2.0_10602 |
| H. sapiens |
ENSP00000410071 |
| H. sapiens |
ENSP00000456206 |
| P. humanus |
PHUM131850-PA |
| D. plexippus |
DPOGS213388PA |
| D. melanogaster |
FBgn0003888 |
| A. aegypti |
AAEL005052 |
| B. mori |
BGIBMGA001683-TA |
| H. sapiens |
ENSP00000401317 |
| H. sapiens |
ENSP00000448958 |
| H. sapiens |
ENSP00000399046 |
| H. sapiens |
ENSP00000406811 |
| H. sapiens |
ENSP00000401546 |
| P. humanus |
PHUM130950-PA |
| N. vitripennis |
NV18349-PB |
| H. sapiens |
ENSP00000448889 |
| H. sapiens |
ENSP00000457062 |
| H. sapiens |
ENSP00000395838 |
| A. aegypti |
AAEL002851 |
| H. sapiens |
ENSP00000373058 |
| H. sapiens |
ENSP00000400108 |
| H. sapiens |
ENSP00000449808 |
| D. melanogaster |
FBgn0003890 |
| H. sapiens |
ENSP00000410829 |
| H. sapiens |
ENSP00000447847 |
| A. aegypti |
AAEL004939 |
| H. melpomene |
HMEL015844-PA |
| C. quinquefasciatus |
CPIJ003263 |
| H. sapiens |
ENSP00000272035 |
| H. sapiens |
ENSP00000457610 |
| A. mellifera |
GB10122-PA |
| H. sapiens |
ENSP00000339001 |
| H. sapiens |
ENSP00000399280 |
| H. sapiens |
ENSP00000383375 |
| H. sapiens |
ENSP00000447684 |
| H. sapiens |
ENSP00000448502 |