MidgeBase gene description page [Pn.09317]
Outline
| Gene ID | Pn.09317 |
| Type | Protein coding gene |
| Scaffold | PnScaf9427 |
| Start | 9721 |
| End | 10441 |
| Direction | - |
Sequence
Transcript: 510 (bp)
ATGACGGAAACGATTCAAGCAGAAACTGATAACGCGATCATCTCTTGCCCATCACACGTGACTATAGATACGAGCTTGGGATCATTTGAGATTGAACTCTACTGGAAACATGCACCAAAGACTTGTAGTAACTTCGTAGAGCTCACAAAACGCGGCTATTATGACAATATCACATTTCACAGAGTAATCCCAGAATTCATCATCCAAACTGGAGATCCAACTGGAACTGGTAGAGGAGGAGTGTCAGCGAACGGTCGATACTTTGATGACGAAATTCATCCGGAATTAAGACACGCGGGAGCCGGAATTGTTGCGATGGCAAACAGTGGACCAAACACGAATGGAAGCCAATTCTTCATCACTCTTGCACCGAGCCCTCATCTGGATCACTTGCACACAATTTTTGGCCGAATCAGCAGCGGAATGCAGGTCATCAAGCGAATTGGCGCCGCGCACACAGATGCCGACGATCGTCCGCTGGAAGACATTTTCATTGTTCAAGCGAAATGC
Protein: 170 (aa)
MTETIQAETDNAIISCPSHVTIDTSLGSFEIELYWKHAPKTCSNFVELTKRGYYDNITFHRVIPEFIIQTGDPTGTGRGGVSANGRYFDDEIHPELRHAGAGIVAMANSGPNTNGSQFFITLAPSPHLDHLHTIFGRISSGMQVIKRIGAAHTDADDRPLEDIFIVQAKC
| Type | Start | End | Length |
| CDS |
9724 |
9886 |
163 |
| CDS |
9945 |
10062 |
118 |
| CDS |
10117 |
10271 |
155 |
| CDS |
10368 |
10441 |
74 |
| intron |
9887 |
9944 |
58 |
| intron |
10063 |
10116 |
54 |
| intron |
10272 |
10367 |
96 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001628061 |
predicted protein [Nematostella vectensis] gb|EDO35998.1| predicted protein [Nematostella vectensis] |
1e-57 |
| InterPro |
IPR002130 |
Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain |
|
| Gene Ontology(BP) |
GO:0006457 |
protein folding |
|
| Gene Ontology(MF) |
GO:0003755 |
peptidyl-prolyl cis-trans isomerase activity |
|
| Pfam |
PF00160.16 |
Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD |
3.1e-50 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes