MidgeBase gene description page [Pn.09311]
Outline
| Gene ID | Pn.09311 |
| Type | Protein coding gene |
| Scaffold | PnScaf9415 |
| Start | 24867 |
| End | 26246 |
| Direction | - |
Sequence
Transcript: 1179 (bp)
ATGGCCGCAGTTGCTGATCCAGTTCGTGAAAAGGCTTTGCAGGATTACCGAAAGAAGTTATTAGAGCACAAGGAAGTCGAGTCTCGCCTAAAAGAAATTCGCGAGTCCTTGAAAGAGAGCACAAAGCAATTTGATAAATCTGAAAACGACTTAAAAGCTCTGCAGAGTGTGGGACAGATCGTAGGAGAAGTTTTGAAGCAGCTCACAGAAGATAAATTTATTGTAAAAGCGACTAATGGACCGCGCTATGTTGTCGGTTGCAGAAGACAATTGGACAAGACAAAGTTGAAATCAGGAACACGAGTTGCCCTCGATATGACTACGCTCACCATCATGCGCTATTTGCCAAGAGAAGTTGATCCTCTCGTTTATAACATGTCTCATGAAGATCCAGGTGACGTGACCTACTCGGCTATTGGAGGTCTCTCGGAGCAAATTCGTGAGTTGCGCGAAGTCATCGAACTTCCTCTCCTCAATCCCGAGCTCTTTTTGAGGGTCGGAATCACTCCGCCAAAAGGCTGCCTTCTCTACGGACCGCCGGGAACAGGAAAAACTCTGTTAGCTCGCGCAGTGGCGTCCCAATTAGATGCCAACTTCTTGAAAGTCGTATCTAGCGCTATCGTCGACAAGTATATCGGAGAGTCGGCTCGCTTGATTCGCGAAATGTTCAACTATGCAAGAGATCATCAGCCATGCATCATTTTCATGGACGAGATTGATGCCATTGGTGGCAGACGTTTCTCAGAAGGCACATCGGCAGATCGTGAAATTCAACGTACTCTCATGGAGTTGCTCAATCAAATGGACGGCTTCGACTCGCTCGGTCAAGTTAAGATGATCATGGCCACCAATCGACCCGACACCCTCGATCCAGCTCTTTTGCGTCCTGGTCGTCTTGATCGTAAAATTGAAATTCCACTTCCGAATGAACAAGCTCGTCTTGAGATTTTAAAGATCCACGCCGGTCCCATAGCAAAGCATGGTGATATCGATTATGAGGCCGTAGTAAAACTATCAGACACCTTCAATGGCGCTGACTTGCGAAACGTATGCACAGAAGCTGGACTGTTTGCAATTCGAGCCGAACGCGAGTATGTGGTCCAAGAAGATTTCATGAAAGCCGTCAGAAAGGTTTCAGATAACAAGAAGTTGGAGAGCAAATTAGACTATAAACCAGTT
Protein: 393 (aa)
MAAVADPVREKALQDYRKKLLEHKEVESRLKEIRESLKESTKQFDKSENDLKALQSVGQIVGEVLKQLTEDKFIVKATNGPRYVVGCRRQLDKTKLKSGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDVTYSAIGGLSEQIRELREVIELPLLNPELFLRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDSLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGDIDYEAVVKLSDTFNGADLRNVCTEAGLFAIRAEREYVVQEDFMKAVRKVSDNKKLESKLDYKPV
| Type | Start | End | Length |
| CDS |
24870 |
24969 |
100 |
| CDS |
25029 |
25890 |
862 |
| CDS |
25966 |
26085 |
120 |
| CDS |
26150 |
26246 |
97 |
| intron |
24970 |
25028 |
59 |
| intron |
25891 |
25965 |
75 |
| intron |
26086 |
26149 |
64 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001845060 |
26S protease regulatory subunit S10B [Culex quinquefasciatus] gb|EDS39076.1| 26S protease regulatory subunit S10B [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR003959 |
ATPase, AAA-type, core |
|
| InterPro |
IPR003593 |
AAA+ ATPase domain |
|
| InterPro |
IPR003960 |
ATPase, AAA-type, conserved site |
|
| InterPro |
IPR005937 |
26S proteasome subunit P45 |
|
| Gene Ontology(BP) |
GO:0030163 |
protein catabolic process |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Gene Ontology(MF) |
GO:0016787 |
hydrolase activity |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0017111 |
nucleoside-triphosphatase activity |
|
| Pfam |
PF13207.1 |
AAA domain |
0.0002 |
| Pfam |
PF11593.3 |
Mediator complex subunit 3 fungal |
0.087 |
| Pfam |
PF12846.2 |
AAA-like domain |
0.053 |
| Pfam |
PF01695.12 |
IstB-like ATP binding protein |
0.002 |
| Pfam |
PF06068.8 |
TIP49 C-terminus |
0.015 |
| Pfam |
PF13245.1 |
Part of AAA domain |
0.00072 |
| Pfam |
PF05673.8 |
Protein of unknown function (DUF815) |
0.0015 |
| Pfam |
PF13401.1 |
AAA domain |
7.8e-08 |
| Pfam |
PF09848.4 |
Uncharacterized conserved protein (DUF2075) |
0.093 |
| Pfam |
PF00158.21 |
Sigma-54 interaction domain |
0.081 |
| Pfam |
PF13238.1 |
AAA domain |
0.0035 |
| Pfam |
PF13476.1 |
AAA domain |
0.39 |
| Pfam |
PF07726.6 |
ATPase family associated with various cellular activities (AAA) |
0.0075 |
| Pfam |
PF13086.1 |
AAA domain |
0.015 |
| Pfam |
PF04851.10 |
Type III restriction enzyme, res subunit |
0.022 |
| Pfam |
PF05729.7 |
NACHT domain |
0.032 |
| Pfam |
PF02562.11 |
PhoH-like protein |
0.049 |
| Pfam |
PF07728.9 |
AAA domain (dynein-related subfamily) |
8.2e-06 |
| Pfam |
PF13481.1 |
AAA domain |
0.0079 |
| Pfam |
PF07724.9 |
AAA domain (Cdc48 subfamily) |
6.5e-06 |
| Pfam |
PF00910.17 |
RNA helicase |
0.007 |
| Pfam |
PF06745.8 |
KaiC |
0.034 |
| Pfam |
PF13191.1 |
AAA ATPase domain |
3.6e-06 |
| Pfam |
PF13479.1 |
AAA domain |
0.038 |
| Pfam |
PF13604.1 |
AAA domain |
0.068 |
| Pfam |
PF13521.1 |
AAA domain |
0.034 |
| Pfam |
PF01637.13 |
Archaeal ATPase |
0.0079 |
| Pfam |
PF13671.1 |
AAA domain |
0.00072 |
| Pfam |
PF04048.9 |
Sec8 exocyst complex component specific domain |
0.026 |
| Pfam |
PF01078.16 |
Magnesium chelatase, subunit ChlI |
0.0063 |
| Pfam |
PF00004.24 |
ATPase family associated with various cellular activities (AAA) |
2.9e-44 |
| Pfam |
PF13173.1 |
AAA domain |
0.0011 |
| Pfam |
PF05496.7 |
Holliday junction DNA helicase ruvB N-terminus |
1e-05 |
| Pfam |
PF04156.9 |
IncA protein |
0.43 |
| Pfam |
PF02223.12 |
Thymidylate kinase |
0.052 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB20013-PA |
| T. castaneum |
TC010321 |
| P. vanderplanki |
Pv.03125 |
| B. mori |
BGIBMGA010794-TA |
| P. humanus |
PHUM164100-PA |
| H. sapiens |
ENSP00000401802 |
| D. plexippus |
DPOGS201696PA |
| C. quinquefasciatus |
CPIJ003334 |
| M. musculus |
ENSMUSG00000021832 |
| A. gambiae |
AGAP001407 |
| A. aegypti |
AAEL004563 |
| N. vitripennis |
NV13405-PA |
| D. melanogaster |
FBgn0028685 |
| H. melpomene |
HMEL016893-PA |
| D. melanogaster |
FBgn0036224 |