MidgeBase gene description page [Pn.09270]
Outline
| Gene ID | Pn.09270 |
| Type | Protein coding gene |
| Scaffold | PnScaf9366 |
| Start | 2494 |
| End | 5379 |
| Direction | + |
Sequence
Transcript: 945 (bp)
ATGGGCATCATTGCCGACATTCTCTGCGAGAGCTACGGAATGGATAAGGAGGAAGCGAGCGTCTGCACGGCGAGCTATTTGAAAGCATTCAGAAAGTGTCCCGACAATCCATCAATGTCACTCGATCAATGGCGCTCGGAACTGTGGAACAGCGCATTGCCGCCGAAGTACAAGCACTTTTCGTACGACATCTACCAACAATGGCTACAGTATCGCTATCATTTTCTAGAGTTGCCGAGCGAGCTCGTGCAGATGTTGCGTCAGCTCCGCAAGAACTACTTGCTCGCCATCATCACGAATGGCACGAGCAATAGTCAGTGGGAAAAGATCCACAAGCTCGGGCTCAACAAGGCACTCTTTGATTGCATTCTCGTCTCGGCCGATTGCGGCTACGAGAAACCCGACTCGAGAATATTCACAGCTGCGTGCAACTATCTCGGTGTGTTGCCGCAAAATTGCATAATGGTGGGCGACAAGCTCGACACCGACATACAGGGTGGAAAAATGGCAGATTTGTTTGCTACGGTGTGGATTCCGTTGAATTTTCCAGCGCAAGTCGAGGCAAACGGCGCAATTGTGCCCGACATCACGATCAGCAGCATGTACGAGCTGAAGTCGCTGTTAATTGTGGATGACCAGCCCACACCGTCGTCGTCGTCATCGTCGTCGCTGCAAGCGCAATCAACCGGCGGAAATGCGAGATCACTGAAGCTAAAAGCATCACGTTCCATTATGAGTAATGGTCCATTAACTTTGTCATCCACCGCATCACCGTCGTCCACGTCGTCGACAGCATCGACACTAGCGTCAGGCGCTGCTCCCTTCTCAAGCACCGGATGTTTTTCGTCGAAGGGGAAGAGCACTGCGCCGTATCCGAAGCGCTTCCTTGCGCCGCCGTCGCCCATCGACTTAGACAATGACGCCTCCAATCAGTCGGACGGCTCA
Protein: 315 (aa)
MGIIADILCESYGMDKEEASVCTASYLKAFRKCPDNPSMSLDQWRSELWNSALPPKYKHFSYDIYQQWLQYRYHFLELPSELVQMLRQLRKNYLLAIITNGTSNSQWEKIHKLGLNKALFDCILVSADCGYEKPDSRIFTAACNYLGVLPQNCIMVGDKLDTDIQGGKMADLFATVWIPLNFPAQVEANGAIVPDITISSMYELKSLLIVDDQPTPSSSSSSSLQAQSTGGNARSLKLKASRSIMSNGPLTLSSTASPSSTSSTASTLASGAAPFSSTGCFSSKGKSTAPYPKRFLAPPSPIDLDNDASNQSDGS
| Type | Start | End | Length |
| CDS |
2494 |
2502 |
9 |
| CDS |
2762 |
3247 |
486 |
| CDS |
4927 |
5376 |
450 |
| intron |
2503 |
2761 |
259 |
| intron |
3248 |
4926 |
1679 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFR21987 |
hypothetical protein AND_15915 [Anopheles darlingi] |
7e-56 |
| InterPro |
IPR006439 |
HAD-superfamily hydrolase, subfamily IA, variant 1 |
|
| InterPro |
IPR023214 |
HAD-like domain |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0008967 |
phosphoglycolate phosphatase activity |
|
| Pfam |
PF13242.1 |
HAD-hyrolase-like |
1.3e-07 |
| Pfam |
PF00702.21 |
haloacid dehalogenase-like hydrolase |
4e-09 |
| Pfam |
PF03031.13 |
NLI interacting factor-like phosphatase |
0.007 |
| Pfam |
PF13419.1 |
Haloacid dehalogenase-like hydrolase |
5.4e-18 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000043346 |
| B. mori |
BGIBMGA005036-TA |
| H. melpomene |
HMEL004126-PA |
| A. mellifera |
GB11562-PA |
| D. melanogaster |
FBgn0029801 |
| M. musculus |
ENSMUSG00000053916 |
| H. sapiens |
ENSP00000302441 |
| P. vanderplanki |
Pv.07202 |
| D. plexippus |
DPOGS204154PA |
| C. quinquefasciatus |
CPIJ008694 |
| N. vitripennis |
NV11534-PA |
| A. aegypti |
AAEL002791 |
| A. gambiae |
AGAP004391 |
| T. castaneum |
TC030637 |