MidgeBase gene description page [Pn.09261]
Outline
| Gene ID | Pn.09261 |
| Type | Protein coding gene |
| Scaffold | PnScaf9358 |
| Start | 2481 |
| End | 5308 |
| Direction | + |
Sequence
Transcript: 951 (bp)
ATGGCTGAGTTGACATTCGACGAGTTTGTTCAAATTTTCGGAAAAACCTACCTGACCAGCGAGGAGATGCTCGTGGCGCGTCGCAACTACGAGGCGCACGTGGCCTACGTGAACGAGTTCAACAACGCCATCGGCTACACGTTCACGCAGAGAGTGAACCAGTTTTCGGATCTGACCAGACGCGAGAAGCGCCGCGTGAACGGCTTCCAGATGTCCGCCTTCGCCAAGGTCATGGCCGAGCGCAAAGTCATCGCCGATCGAAATCACGTGCCCGACTTTGTTGACTGGAGAATGTCGGGCGCCGTGACGGCCGTTCAGGATCAAGGCTACTACTGTGGCTCGTGCTGGGCCTACTCGACGACTGGGGCGCTTGAGGGTGCGATTGCTTTGGCACAACCATCCATGAAGCAGGTGGAGAAGCTGTCGGAGCAGCAGTTTATCGACTGCAACCGCAACTCCCAAATCGGCAACTACGGATGCGATGGTGGCTTCATGGCAATCGGCCTGGCATATGCCCGCCTCCAGGACGTCGCAACCGACAAAGTCTACCCGTACGTGGAGTCGGAGGGCGCTTGCATCTACAACCGGCCTCAGCAGCGCTTCAACTTATCGCTGCCGACGATGCTGCCGTCGGGCGACGAGAACGCGCTGAAAATCGCGGTCGCCACTTACGGGCCGATCGCTGTGGCCATCGACGCGTCGCAGGAGTCCTTCTTCGGCTACTCGGACGGCGTCTACTTCGATCCGAAGTGCACCAAGTGGCTGAACCATGCGGTGCTGGTCGTTGGCTACGGAACGGACCCGGTCGGCGGTGACTACTGGCTCATCAAGAACTCGTGGAGCGACTACTGGGGCAACGGCGGCTACATGAAGCTGGCGAGGAACCGCAACAACCACTGCGGCATCTCGCGCTACGCCGTCTACATTCGGGTGAATCGAGTTCTGCGCCCC
Protein: 317 (aa)
MAELTFDEFVQIFGKTYLTSEEMLVARRNYEAHVAYVNEFNNAIGYTFTQRVNQFSDLTRREKRRVNGFQMSAFAKVMAERKVIADRNHVPDFVDWRMSGAVTAVQDQGYYCGSCWAYSTTGALEGAIALAQPSMKQVEKLSEQQFIDCNRNSQIGNYGCDGGFMAIGLAYARLQDVATDKVYPYVESEGACIYNRPQQRFNLSLPTMLPSGDENALKIAVATYGPIAVAIDASQESFFGYSDGVYFDPKCTKWLNHAVLVVGYGTDPVGGDYWLIKNSWSDYWGNGGYMKLARNRNNHCGISRYAVYIRVNRVLRP
| Type | Start | End | Length |
| CDS |
2481 |
2510 |
30 |
| CDS |
3719 |
4036 |
318 |
| CDS |
4261 |
4395 |
135 |
| CDS |
4719 |
5010 |
292 |
| CDS |
5073 |
5118 |
46 |
| CDS |
5176 |
5305 |
130 |
| intron |
2511 |
3718 |
1208 |
| intron |
4037 |
4260 |
224 |
| intron |
4396 |
4718 |
323 |
| intron |
5011 |
5072 |
62 |
| intron |
5119 |
5175 |
57 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
AAF86584 |
cathepsin L cysteine protease [Haemonchus contortus] |
4e-61 |
| InterPro |
IPR013128 |
Peptidase C1A, papain |
|
| InterPro |
IPR013201 |
Proteinase inhibitor I29, cathepsin propeptide |
|
| InterPro |
IPR025661 |
Cysteine peptidase, asparagine active site |
|
| InterPro |
IPR025660 |
Cysteine peptidase, histidine active site |
|
| InterPro |
IPR000668 |
Peptidase C1A, papain C-terminal |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0008234 |
cysteine-type peptidase activity |
|
| Pfam |
PF08246.7 |
Cathepsin propeptide inhibitor domain (I29) |
3.5e-08 |
| Pfam |
PF00112.18 |
Papain family cysteine protease |
5.9e-65 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.06457 |