MidgeBase gene description page [Pn.09203]
Outline
| Gene ID | Pn.09203 |
| Type | Protein coding gene |
| Scaffold | PnScaf9239 |
| Start | 13328 |
| End | 14889 |
| Direction | - |
Sequence
Transcript: 1110 (bp)
ATGACAAGACGTGTTTTACTCATCAACTTACTGCTCATCCTAGGCATTGGCGTGACCACAGCTCAATTGTCAGCCATCGAGCCCATAGTTCCATACGAAGAAATTGCGAAACCCATCGTTTACCTTCAGTGTCCACCGCCGAAGACCTGGTGGGATCCGGTCGATTACAGATGCGAGTGCCATCCGAAAATCAGCAGAATATGCCCTCTGAGAGTTCAGAAATTCAGCGAAGAAACCTGCAAATGCGAGTGTACTATCTCACCGAAGTGTCAATGGTATGAAAAAGTCGACCCTGCCACATGCAAATGCGTCTGCAGAGAGGGTTGTCCACAGGTCGTTCAGGGCTGCAATTCCCCGCAAATTTGGAACAAAAAAGCTTGTCGATGTGAATGCCCGAAAATCCCTAGCTGCCGCAGTTTTGAGTATTGGGATCACGAGACTTGTTCGTGCAAGTGCAAAGAGCAGCGTGACGAGGCTGATTGCTGTCCACCAAAGTTCTGGGACAAAATGAGCTGCCAGTGCCGCTGTAAGAATGTTCAAAGATGTCCACCAAACATGGTGTGGGACAACGACCAGTGCAGATGCGTTTGCATTAAGCCTTACGTTTGGAATCCTCAATCACAAAAATGCACCTGCCCCAACATAAAGTGCTTCGACAACTACATTTTGAACAACAACACCTGCGAATGCGAGTGCAATACAAAGCTGGCCAAAACCTGCATCCCACCCGACTATTTCCTTAAGAAAGAGTGCAAGTGCAAGTGCGGAATCGCGTGCAAGACAAGCTACGTTCTCAACCCAGAAACCTGCAAATGCTACTGCGACAAACGACTCGAGAGATACTGCAGAAGCTCGGGCCAAGGCAGGTGGAACGCAGACGAGTGTTCGTGCATGTGCACCAAAATCGGCTGCATCGAACCGCTGGTCAAAGATCCGCTCACCTGTACATGTGTCAAGCAGCCTCTCGTCCTTGACTGCGACACTCGATTCGGGCATATTTACGATCCGGAGACAGGTTCCTGCACTTGCAAGCCCACTGGATGCCCCAAGGGCATGATTCAAAACAAGGAAACTTGCAAGTGCGAGTTCCCGGCTTTTGAGGCCATTAAC
Protein: 370 (aa)
MTRRVLLINLLLILGIGVTTAQLSAIEPIVPYEEIAKPIVYLQCPPPKTWWDPVDYRCECHPKISRICPLRVQKFSEETCKCECTISPKCQWYEKVDPATCKCVCREGCPQVVQGCNSPQIWNKKACRCECPKIPSCRSFEYWDHETCSCKCKEQRDEADCCPPKFWDKMSCQCRCKNVQRCPPNMVWDNDQCRCVCIKPYVWNPQSQKCTCPNIKCFDNYILNNNTCECECNTKLAKTCIPPDYFLKKECKCKCGIACKTSYVLNPETCKCYCDKRLERYCRSSGQGRWNADECSCMCTKIGCIEPLVKDPLTCTCVKQPLVLDCDTRFGHIYDPETGSCTCKPTGCPKGMIQNKETCKCEFPAFEAIN
| Type | Start | End | Length |
| CDS |
13331 |
13818 |
488 |
| CDS |
13947 |
14072 |
126 |
| CDS |
14128 |
14195 |
68 |
| CDS |
14263 |
14305 |
43 |
| CDS |
14373 |
14513 |
141 |
| CDS |
14584 |
14784 |
201 |
| CDS |
14847 |
14889 |
43 |
| intron |
13819 |
13946 |
128 |
| intron |
14073 |
14127 |
55 |
| intron |
14196 |
14262 |
67 |
| intron |
14306 |
14372 |
67 |
| intron |
14514 |
14583 |
70 |
| intron |
14785 |
14846 |
62 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
AAA99803 |
185 kDa silk protein [Chironomus pallidivittatus] |
1e-21 |
| InterPro |
IPR004153 |
CXCXC repeat |
|
| Pfam |
PF03128.9 |
CXCXC repeat |
4.6e-12 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes