MidgeBase gene description page [Pn.09198]
Outline
| Gene ID | Pn.09198 |
| Type | Protein coding gene |
| Scaffold | PnScaf9237 |
| Start | 13465 |
| End | 15115 |
| Direction | + |
Sequence
Transcript: 1320 (bp)
ATGGCTGCTGGAACAACACTGCAAAAGGCAATTGACATTGTAACGAAAGCAACGGAGGAAGATAGAAACAAAAATTATGAAGAAGCGCTACGGCTCTATGAGCACGGTGTCGAATATTTTCTGCATGCAATAAAATATGAGGCCCAAGGTGACAAAGCAAAGGAATCTATACGATCAAAGTGTTTGCAATACCTCGACCGTGCAGAAAAATTGAAACAATATCTGAAGAAAGGCAAGAAACAGAAGCCGATGAAAGATGGTGGCGACTCTTCCAAAGATAAGGATAAGAAAAGTGACAGTGACTCAGACGAGGAAGATCCGGAGAAAAAGAAGCTTCAGAGCAAGCTGGAGGGTGCAATTGTCGTCGAGAAGCCTCACGTGAAGTGGTCCGATGTCGCTGGACTTGAAGGCGCGAAGGAAGCTCTCAAGGAAGCCGTCATTCTACCAATCAAATTCCCTCACTTATTTACCGGCAAGAGAGTTCCCTGGAAGGGCATTTTGCTCTTTGGACCTCCCGGAACCGGTAAATCGTATCTTGCGAAAGCCGTCGCAACGGAAGCAAACAACTCGACATTTTTCTCCGTGTCAAGTGCCGACTTGGTCTCCAAATGGCTCGGCGAGTCCGAGAAACTTGTCCGCAATCTCTTTGAATTGGCGCGAGCACACAAGCCGAGCATCATCTTCATCGACGAAGTGGACTCGCTCTGCTCGTCGCGCTCGGAAAACGAAAGTGAAAGCGCCCGTCGAATCAAGACGGAGTTTCTCGTTCAGATGCAAGGCGTCGGCAACGATTCGGAAGGAATTCTCGTGTTGGGCGCCACGAATATTCCTTGGGTCCTCGATTCCGCCATCAGGAGACGATTTGAGAAGAGAATTTACATTCCTCTGCCTGAGGAGAACGCTCGCTTGACAATGTTCAAAATTCATCTGGGCAACACGGCACACGTCTTAACCGAGGAGAATCTGAGGCAGTTGGCAAAGAAAACCGAAGGCTACTCAGGCGCGGATATTTCGATCGTCGTTCGCGACGCCCTCATGCAGCCCGTCAGGAAAGTTCAGACAGCGACACACTTCAAGAGAGTTCGCGGACCTTCGCCTTTGGACAAGAATTTAATAGTGGATGACCTTCTCACTCCATGCTCACCCGGCGAACGAGGAGCAATCGAAATGACCTGGATGGAAGTCGAGGGAGAGAAGCTGTTCGAGCCTCCAGTTACGATGAGCGATATGCTGAACTCTCTCGCTAGAACAAAGCCTACCATCAACGAGGACGACATGAAGAAGCTCCAGAAGTTCACCGACGATTTCGGTCAGGAGGGC
Protein: 440 (aa)
MAAGTTLQKAIDIVTKATEEDRNKNYEEALRLYEHGVEYFLHAIKYEAQGDKAKESIRSKCLQYLDRAEKLKQYLKKGKKQKPMKDGGDSSKDKDKKSDSDSDEEDPEKKKLQSKLEGAIVVEKPHVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRVPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSADLVSKWLGESEKLVRNLFELARAHKPSIIFIDEVDSLCSSRSENESESARRIKTEFLVQMQGVGNDSEGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEENARLTMFKIHLGNTAHVLTEENLRQLAKKTEGYSGADISIVVRDALMQPVRKVQTATHFKRVRGPSPLDKNLIVDDLLTPCSPGERGAIEMTWMEVEGEKLFEPPVTMSDMLNSLARTKPTINEDDMKKLQKFTDDFGQEG
| Type | Start | End | Length |
| CDS |
13465 |
13600 |
136 |
| CDS |
13675 |
13813 |
139 |
| CDS |
13878 |
14112 |
235 |
| CDS |
14175 |
14741 |
567 |
| CDS |
14801 |
14944 |
144 |
| CDS |
15014 |
15112 |
99 |
| intron |
13601 |
13674 |
74 |
| intron |
13814 |
13877 |
64 |
| intron |
14113 |
14174 |
62 |
| intron |
14742 |
14800 |
59 |
| intron |
14945 |
15013 |
69 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001869800 |
vacuolar protein sorting-associating protein 4A [Culex quinquefasciatus] gb|EDS30381.1| vacuolar protein sorting-associating protein 4A [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR003593 |
AAA+ ATPase domain |
|
| InterPro |
IPR003959 |
ATPase, AAA-type, core |
|
| InterPro |
IPR003960 |
ATPase, AAA-type, conserved site |
|
| InterPro |
IPR015415 |
Vps4 oligomerisation, C-terminal |
|
| InterPro |
IPR007330 |
MIT |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0017111 |
nucleoside-triphosphatase activity |
|
| Pfam |
PF05729.7 |
NACHT domain |
0.013 |
| Pfam |
PF02562.11 |
PhoH-like protein |
0.01 |
| Pfam |
PF13207.1 |
AAA domain |
2.6e-05 |
| Pfam |
PF07728.9 |
AAA domain (dynein-related subfamily) |
8.4e-06 |
| Pfam |
PF00625.16 |
Guanylate kinase |
0.031 |
| Pfam |
PF13481.1 |
AAA domain |
8.7e-06 |
| Pfam |
PF12846.2 |
AAA-like domain |
0.068 |
| Pfam |
PF06414.7 |
Zeta toxin |
0.051 |
| Pfam |
PF07724.9 |
AAA domain (Cdc48 subfamily) |
0.00093 |
| Pfam |
PF01695.12 |
IstB-like ATP binding protein |
2.7e-06 |
| Pfam |
PF06068.8 |
TIP49 C-terminus |
2.2e-05 |
| Pfam |
PF00910.17 |
RNA helicase |
0.016 |
| Pfam |
PF06745.8 |
KaiC |
0.012 |
| Pfam |
PF13245.1 |
Part of AAA domain |
0.045 |
| Pfam |
PF05673.8 |
Protein of unknown function (DUF815) |
0.00027 |
| Pfam |
PF13191.1 |
AAA ATPase domain |
0.004 |
| Pfam |
PF13401.1 |
AAA domain |
6.9e-07 |
| Pfam |
PF13521.1 |
AAA domain |
0.079 |
| Pfam |
PF09336.5 |
Vps4 C terminal oligomerisation domain |
2.9e-28 |
| Pfam |
PF13671.1 |
AAA domain |
0.00096 |
| Pfam |
PF00158.21 |
Sigma-54 interaction domain |
0.028 |
| Pfam |
PF01078.16 |
Magnesium chelatase, subunit ChlI |
0.019 |
| Pfam |
PF00004.24 |
ATPase family associated with various cellular activities (AAA) |
1.5e-41 |
| Pfam |
PF13238.1 |
AAA domain |
0.012 |
| Pfam |
PF01443.13 |
Viral (Superfamily 1) RNA helicase |
0.08 |
| Pfam |
PF13173.1 |
AAA domain |
9.7e-05 |
| Pfam |
PF05496.7 |
Holliday junction DNA helicase ruvB N-terminus |
9.2e-05 |
| Pfam |
PF14148.1 |
YhdB-like protein |
0.091 |
| Pfam |
PF04212.13 |
MIT (microtubule interacting and transport) domain |
8.9e-23 |
| Pfam |
PF13339.1 |
Apoptosis antagonizing transcription factor |
0.25 |
| Pfam |
PF13304.1 |
AAA domain |
0.045 |
| Pfam |
PF04851.10 |
Type III restriction enzyme, res subunit |
0.0088 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA006243-TA |
| D. plexippus |
DPOGS211029PA |
| D. melanogaster |
FBgn0027605 |
| A. gambiae |
AGAP000625 |
| M. musculus |
ENSMUSG00000009907 |
| N. vitripennis |
NV16833-PA |
| A. aegypti |
AAEL002938 |
| H. melpomene |
HMEL008042-PA |
| C. quinquefasciatus |
CPIJ019476 |
| P. humanus |
PHUM537990-PA |
| H. sapiens |
ENSP00000461295 |
| H. sapiens |
ENSP00000254950 |
| P. vanderplanki |
Pv.11990 |
| A. mellifera |
GB12390-PA |
| M. musculus |
ENSMUSG00000031913 |
| T. castaneum |
TC003829 |
| H. sapiens |
ENSP00000238497 |
| S. invicta |
SI2.2.0_11517 |