MidgeBase gene description page [Pn.09173]
Outline
| Gene ID | Pn.09173 |
| Type | Protein coding gene |
| Scaffold | PnScaf9187 |
| Start | 2770 |
| End | 5371 |
| Direction | - |
Sequence
Transcript: 1746 (bp)
ATGCTGCCGCTGCCAATTGAATGTAACGTTGACATAATATTTGCAGGATGGAAGGAAATTCTGAAAGGAGTGAGTGGGAGCTTCAAAGGAGGAGAACTGACGGCCATATTGGGACCAAGCGGAAGCGGAAAATCCACACTCCTAAACCTGTTGTCTGGCTTTCAGGAGAAAAATGTGCGCGGAAAGATCACGATGAATGAATTAGGAATGAATTATTTTCGTAGAAATATCGTTTACATCATGCAAGATAATCACCTACAGTCGTTGCTGACAGTCGGGGAGTCGATGAATTTTGCACTTCGTTTCAAAATGGGAAACCAGTTGAACTCCTACAAGAAATGGCAGAGGATTGCGGAGATTTTGATGTCCTTCGGCTTGGCGGACGTCGAAAATGAGTACGTAAAGAATTTGAGTGGCGGTCAACAGAAGCGATTGGCTATTGCACTTGAAATTGTGGACAACCCTCTCCTCGTTTTCGTGGACGAACCACTGACAGGGTTGGACACTGTCTCCGCCTCGATTTGCATTAATCTCATGAAGCGTTTGGCGCGCGATGGGAAAACCATAATTTGCACCATTCACCAGCCTTCGAGCAACCAGCTGCAACTTTTCGACCACCTTTACGTGCTCGCTAACGGCTTTTGCTGCTACCAAGGATCATCGAAAAATCTCGTGCCATTTCTCTCCGAAGTGGGCCTCGCTTGTCCCGAGTCCCATAATCCAGCCGATTTCCTGCTGGAAGCAATCACCGGCGTCTATGGACCGGAGTACAATGAAAAGCTGACAGCGAAAATTGAGAATGGAAAAAATGAGCAGTACAGAAGTGCGGCCTCAACATCGATTGAAAGTAACGATCGCGACTGCCTTGCACCACACGGCAATTTCGCTAGACATTCACCTTCGTCAGTACAGCAGTTTTATGATTTACTGCTGCGGAGTTTCATCATCATGCTTCGTGACAAGAGTTTCCTCAACATTCGGATCATTATGCACGTGGCCGTTGGCTTGTTGCTCGGTGCAATCTACTACGATATTGGCAACGATGCTCAGTATATTTTCAACAACTTTCGGCTCATCTTTGTGTCGCTGAGCTTCCTCACATACACGGCCTACTATTCTATAATGGTCGCATTTCCGTTAAACTTTCCCTGGATTAAACGAGAGACATTCAATCGATGGTATACGCCGTCGACTTACTTCATAAATGCGCTCGTGAGTGACATTCCTGTGCTCATATTCACGGCTTTCACATTCATAATTCCAATGTACTTTTTGACGTCACAACCCCATGAGCCTTTTCGATTTTTCACGTTCTCGCTCATTCTCATTCTTAATAGTATTTGCTCGCAGGCGTTCGGCTTAATTGTCGGCGCCTTTGCTGATCTTAAGCAAACCTTGATACTCGCACCTGTATTTATGATTTTCCACGGTGCATTCTCGGGTTTTTACATTCTCAAAAAGGACGCTCACGAGATATGGCATTCGCTTTTCGAGATATCATACCTAAAGTACTCTGCATACGGCACAGAAATGAGCATTTTGGGCTTCAACCGAACCAAGATGGAGTGCGGCGCATTCTACTGTCATTTTCGTTCGCCTCAAAAGTTCCTTCAATCTCTCGAATACGCTACGCAACCGGACGAGTTTATCCTGTGCATTTGGATGTTGGTCATCAATTTCGTTCTGAATGTCATCGTCGCCTACTTTCTCGTCACACGACGACTGAAGAGCAAGTGCCTGATTGAG
Protein: 582 (aa)
MLPLPIECNVDIIFAGWKEILKGVSGSFKGGELTAILGPSGSGKSTLLNLLSGFQEKNVRGKITMNELGMNYFRRNIVYIMQDNHLQSLLTVGESMNFALRFKMGNQLNSYKKWQRIAEILMSFGLADVENEYVKNLSGGQQKRLAIALEIVDNPLLVFVDEPLTGLDTVSASICINLMKRLARDGKTIICTIHQPSSNQLQLFDHLYVLANGFCCYQGSSKNLVPFLSEVGLACPESHNPADFLLEAITGVYGPEYNEKLTAKIENGKNEQYRSAASTSIESNDRDCLAPHGNFARHSPSSVQQFYDLLLRSFIIMLRDKSFLNIRIIMHVAVGLLLGAIYYDIGNDAQYIFNNFRLIFVSLSFLTYTAYYSIMVAFPLNFPWIKRETFNRWYTPSTYFINALVSDIPVLIFTAFTFIIPMYFLTSQPHEPFRFFTFSLILILNSICSQAFGLIVGAFADLKQTLILAPVFMIFHGAFSGFYILKKDAHEIWHSLFEISYLKYSAYGTEMSILGFNRTKMECGAFYCHFRSPQKFLQSLEYATQPDEFILCIWMLVINFVLNVIVAYFLVTRRLKSKCLIE
| Type | Start | End | Length |
| CDS |
2773 |
2785 |
13 |
| CDS |
3008 |
3351 |
344 |
| CDS |
3472 |
4839 |
1368 |
| CDS |
5351 |
5371 |
21 |
| intron |
2786 |
3007 |
222 |
| intron |
3352 |
3471 |
120 |
| intron |
4840 |
5350 |
511 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001653360 |
abc transporter [Aedes aegypti] gb|EAT39580.1| abc transporter [Aedes aegypti] |
1e-130 |
| InterPro |
IPR020064 |
ABC transporter, G1-like |
|
| InterPro |
IPR003593 |
AAA+ ATPase domain |
|
| InterPro |
IPR003439 |
ABC transporter-like |
|
| InterPro |
IPR017871 |
ABC transporter, conserved site |
|
| InterPro |
IPR013525 |
ABC-2 type transporter |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0017111 |
nucleoside-triphosphatase activity |
|
| Gene Ontology(MF) |
GO:0016887 |
ATPase activity |
|
| Pfam |
PF13207.1 |
AAA domain |
0.0046 |
| Pfam |
PF12846.2 |
AAA-like domain |
0.003 |
| Pfam |
PF13481.1 |
AAA domain |
0.014 |
| Pfam |
PF01061.19 |
ABC-2 type transporter |
1.7e-25 |
| Pfam |
PF13401.1 |
AAA domain |
0.026 |
| Pfam |
PF13191.1 |
AAA ATPase domain |
0.0076 |
| Pfam |
PF13521.1 |
AAA domain |
0.033 |
| Pfam |
PF03215.10 |
Rad17 cell cycle checkpoint protein |
0.077 |
| Pfam |
PF13555.1 |
P-loop containing region of AAA domain |
0.00048 |
| Pfam |
PF01926.18 |
50S ribosome-binding GTPase |
0.0098 |
| Pfam |
PF13166.1 |
AAA domain |
0.27 |
| Pfam |
PF00005.22 |
ABC transporter |
1.8e-18 |
| Pfam |
PF13238.1 |
AAA domain |
0.0063 |
| Pfam |
PF13476.1 |
AAA domain |
0.0046 |
| Pfam |
PF02492.14 |
CobW/HypB/UreG, nucleotide-binding domain |
0.037 |
| Pfam |
PF03193.11 |
Protein of unknown function, DUF258 |
8.3e-05 |
| Pfam |
PF11649.3 |
Virus neck protein |
0.072 |
| Pfam |
PF13304.1 |
AAA domain |
3.3e-09 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes