MidgeBase gene description page [Pn.09122]
Outline
| Gene ID | Pn.09122 |
| Type | Protein coding gene |
| Scaffold | PnScaf9146 |
| Start | 52413 |
| End | 53699 |
| Direction | + |
Sequence
Transcript: 1059 (bp)
ATGGTCTCAGTATTGGCCATGCTGAGGCTCGTGAGGCCGTCGCTGACTCATCAAGGCGTGATAAAGAAAATAACGGCAAAGGACGTCATCCTCTGCTCGGGCTGCAGCGGTGCCCTGGAGCTTTGCATCAGTGTCATTGCAAACGATGGCCAGAACATTTTGGTTCCAAAGCCCGGCTTCTCAATCTACCACACGCAGGCCTCGAATCGAATCGCATGTCGCTCCTATAACCTGCTACCGCACCAAAACTGGGAAATCGATTTAAAGCACTTGGAAGAAGTCATCGACGACAAAACTGCAGCGATAATTGTCACGAATCCTTCGAATCCCTGCGGCTCCGTCTTCAGCAAGCAGCACATTTTGGAAATTCTGCAGGTCGCCGAGCGAAACTTTCTGCCCATCATTGCGGATGAGATTTACGAGCACATGGTTTTTCCGGGCTGCGAATACAACTCGTTTGCCTCGCTGTCAAAAAATGTCCCGATTTTGAGCTGCGGTGGAACGACGAAGAGGTTCCTTGTGCCTGGCTGGCGCATGGGCTGGATCATCATTCACGATCGGCACGGAGCATTCGACGAAGTGCGGCGAGGCCTTCTGAACCTGAGCGTTCGCATTCTCGGACCAAATACGCTCGTGCAAGGCGCGCTTCCCAACATTCTTCGCCACACTCCCCAGTGGTTCCACGCTGAAGTGATGAGAACACTGCAGCATCATGCAGACGTCGCCTTCTCGATGCTGGCGAAGGTTCCCGGCTTGAAACCAATTCGGCCTAGTGCCGCCATGTACATGATGATCGGTATCGACATGCCAAGCTTTCCGAACATTCGAGATGACCTCGACTTTGTGGACAAGCTGGTTTCTGAGCAAAGCGTTTTTTGCTTGGCTGGAAGATGCTTTGGAATCGAAAATTTCATAAGAATTGTTCTGACGGCGCCCACCGAGATGATAGTGGAAGCTTGCGAGAGAATGAAGGAATTCTGTGAGAAGCAATTTGAGAGTAACACAAGTGAAAAACATGAAGAAAATTTAACTGTAAAATTGGCAATAATTGAGAAAATT
Protein: 353 (aa)
MVSVLAMLRLVRPSLTHQGVIKKITAKDVILCSGCSGALELCISVIANDGQNILVPKPGFSIYHTQASNRIACRSYNLLPHQNWEIDLKHLEEVIDDKTAAIIVTNPSNPCGSVFSKQHILEILQVAERNFLPIIADEIYEHMVFPGCEYNSFASLSKNVPILSCGGTTKRFLVPGWRMGWIIIHDRHGAFDEVRRGLLNLSVRILGPNTLVQGALPNILRHTPQWFHAEVMRTLQHHADVAFSMLAKVPGLKPIRPSAAMYMMIGIDMPSFPNIRDDLDFVDKLVSEQSVFCLAGRCFGIENFIRIVLTAPTEMIVEACERMKEFCEKQFESNTSEKHEENLTVKLAIIEKI
| Type | Start | End | Length |
| CDS |
52413 |
52458 |
46 |
| CDS |
52627 |
53447 |
821 |
| CDS |
53505 |
53696 |
192 |
| intron |
52459 |
52626 |
168 |
| intron |
53448 |
53504 |
57 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001653614 |
tyrosine aminotransferase [Aedes aegypti] gb|EAT39220.1| tyrosine aminotransferase [Aedes aegypti] |
1e-118 |
| InterPro |
IPR004839 |
Aminotransferase, class I/classII |
|
| InterPro |
IPR015424 |
Pyridoxal phosphate-dependent transferase, major domain |
|
| InterPro |
IPR001176 |
1-aminocyclopropane-1-carboxylate synthase |
|
| InterPro |
IPR021178 |
Tyrosine transaminase |
|
| InterPro |
IPR005958 |
Tyrosine/nicotianamine aminotransferase |
|
| InterPro |
IPR004838 |
Aminotransferases, class-I, pyridoxal-phosphate-binding site |
|
| InterPro |
IPR015421 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 |
|
| InterPro |
IPR015422 |
Pyridoxal phosphate-dependent transferase, major region, subdomain 2 |
|
| Gene Ontology(BP) |
GO:0042218 |
1-aminocyclopropane-1-carboxylate biosynthetic process |
|
| Gene Ontology(BP) |
GO:0009058 |
biosynthetic process |
|
| Gene Ontology(BP) |
GO:0006520 |
cellular amino acid metabolic process |
|
| Gene Ontology(MF) |
GO:0008483 |
transaminase activity |
|
| Gene Ontology(MF) |
GO:0016740 |
transferase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Gene Ontology(MF) |
GO:0016847 |
1-aminocyclopropane-1-carboxylate synthase activity |
|
| Gene Ontology(MF) |
GO:0030170 |
pyridoxal phosphate binding |
|
| Pfam |
PF01212.16 |
Beta-eliminating lyase |
5.9e-07 |
| Pfam |
PF00155.16 |
Aminotransferase class I and II |
4.9e-55 |
| Pfam |
PF01041.12 |
DegT/DnrJ/EryC1/StrS aminotransferase family |
0.008 |
| Pfam |
PF01053.15 |
Cys/Met metabolism PLP-dependent enzyme |
0.0043 |
| Pfam |
PF00266.14 |
Aminotransferase class-V |
0.00014 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA002986-TA |
| M. musculus |
ENSMUSG00000001670 |
| D. plexippus |
DPOGS211111PA |
| N. vitripennis |
NV11108-PA |
| A. gambiae |
AGAP000327 |
| H. melpomene |
HMEL012441-PA |
| S. invicta |
SI2.2.0_13683 |
| H. sapiens |
ENSP00000348234 |
| P. humanus |
PHUM509510-PA |
| P. vanderplanki |
Pv.03249 |
| D. melanogaster |
FBgn0030558 |
| T. castaneum |
TC013185 |
| A. aegypti |
AAEL008963 |
| A. mellifera |
GB15166-PA |
| C. quinquefasciatus |
CPIJ003774 |