MidgeBase gene description page [Pn.09116]
Outline
| Gene ID | Pn.09116 |
| Type | Protein coding gene |
| Scaffold | PnScaf9141 |
| Start | 1005 |
| End | 4275 |
| Direction | - |
Sequence
Transcript: 246 (bp)
ATGCACGCATACGAGAATGTAATTTGTGTGTGTGTTTCGACTGGAATGGGAATCAACGACACAACGGGCCCGCTTTTTTCTAGACCAAGGCGGATTTTTGTCGCGCGCGCTCATGACATGCAGGGACATGAAAGAAAAAGAAATGTGTGTGCGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAATGTTTCTTGTTGTTGAGAAA
Protein: 82 (aa)
MHAYENVICVCVSTGMGINDTTGPLFSRPRRIFVARAHDMQGHERKRNVCAREREREKEREREREREREREREREMFLVVEK
| Type | Start | End | Length |
| CDS |
1008 |
1127 |
120 |
| CDS |
1203 |
1239 |
37 |
| CDS |
1917 |
1970 |
54 |
| CDS |
4241 |
4275 |
35 |
| intron |
1128 |
1202 |
75 |
| intron |
1240 |
1916 |
677 |
| intron |
1971 |
4240 |
2270 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NA |
No hit found |
NA |
| Pfam |
PF03154.10 |
Atrophin-1 family |
0.068 |
| Pfam |
PF12871.2 |
Pre-mRNA-splicing factor 38-associated hydrophilic C-term |
0.65 |
| Pfam |
PF08648.7 |
Protein of unknown function (DUF1777) |
0.15 |
| Pfam |
PF07768.6 |
PVL ORF-50-like family |
2.7 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes