MidgeBase gene description page [Pn.09088]
Outline
| Gene ID | Pn.09088 |
| Type | Protein coding gene |
| Scaffold | PnScaf9089 |
| Start | 6096 |
| End | 11085 |
| Direction | + |
Sequence
Transcript: 2322 (bp)
ATGAGATCACATAAGAAAATAAAATTATCTCAGTATTCGGCGGGCACAATGGATACGACGGAAGAGGATATATTAATGGCTTCGTCGTCGCCGCCGAACGGTCAGTCCAAATCGTCGGACGACCTCGGTGACATGACCTTTTGCATGCCAAATTACGCCAAAGAGGCCCTCAAGATGATGTTCATGATGCGACAGCATCACATGCTCACCGATTGTGTTCTGGAAGTAGACAATGAGTTGTTTCATGTCCACAAAGTTGTATTATCATCAGCTAGTCCCTATTTTAAAGCTATGTTCACGGGCGGATTGAAAGAGTGCGAGATGTCACGTGTGCGGCTACAGGGTGTCTGCCCGACATCAATGGCTAAAATCATTACCTTCATGTACACCGGAAAGATTCACGTATCGGAAGTGACGGTGTGCCAGCTGCTGCCGGCAGCGACGATGTTCCAAGTGCCGAATGTGATAGAGGCATGTTGCGCCTTCCTGGAGCGACAGCTAGACCCCACAAACGCAATCGGGATCGCGAATTTCGCGGAGCAGCACGGATGCGCCATCCTCCGGCAGAAGGCGAATCAATTTATCGAGAGGCATTTCACACAAATTTGTCAGGAGGAGGAGTTTCTGCAGCTGTCCGCCATGCAACTCGTCAATCTCATCCGCAAGGACGAGCTGAATGTGCAAGACGAGCGCGAGGTCTACAATGCCGTCCTCAAGTGGGTCAAGTACGACGAGGATAATCGCTATCCGAAGATGGAGCACATTCTGTACGCCGTTCGCTGTCAATTTCTTACGCCAAAATTCTTAAAAGAGCAAATGAAGAACTGTGATGTATTGAAGCGTGTGCCAGCGTGCCGGGAATATTTAGCGAAAATTTTCAAAGATCTAACCTTGCACAAACGCCCCATCGTGAAGGAGCGCAAACCAAATACGACGCGAATGATTTTCGTGGCAGGCGGCTACTTCCAGCACTCGCTAGACATCCTCGAAGGCTACAACGTCGACGACCGGACGTGGACGACGCTTCCGAAGCTGACAGTGCCGCGCTCGGGCTTGGGCGCTGCGTTCTTGAAGGGAACATTCTACGCGGTGGGCGGTCGAAATAACGCTCCCGGCGCATCATACGACTCGGATTGGGTTGATAGATACGATCCAATCACGGAACAATGGCGACCGTGTGCACCGATGAGCGTGCCGCGAAATCGAGTCGGTGTGGCAACAATGGACGACTTCCTCTACGCCGTCGGTGGCTCATCTGGCACAGAATATCACAATTCCGTTGAATACTTCGATCCCGATCAGGACAGATGGTTCGTTATAGCACCAATGCGTTCAAAGAGACTGGCGGTCGGCGTCGCCGTTGTAAATCGATTGCTCTATGCAATTGGCGGATTTGATGGCGAAAATAGATTGGCATCGATGGAGTGCTATCATCCCGAGAATAACGAATGGACCGATATGCCCCCGATGAAATATCCACGCTCCGGCGCCGGTGTGGCTGTTCTCAATCAGTACATTTATGTCGTTGGCGGATTCGATGGAACGAGGCAGCTATCGTCTGTCGAGCGCTTCGATACCGACAACCGAACGTGGGAGTGCGTAACGGCTATGAAAACATCACGAAGTGCCTTGTCGGTGAATGTGATTGATGGCAAATTATACGCCATGGGCGGCTATGATGGAACGCATTTTTTGTCAAACGTCGAAGTTTACAGTCCGGTCGACGACGTGTGGGAGGACGGCGTTCCGTTGACGTCGGGTCGATCCGGTCTCGCTTCGGCCGTGATTTATCAGCCGTCGTGTCCGCAAAGCTTTTCACAGGACTCCTTGCTGGCCCAGCACTCGGCCCATCGCGAGTACGAAGACGACGGCAAGTCGGAACAAGGAAGCGGAGGCGGCGGAGGGTCTTCCATAAATTTTAATTACTCAAATTCTAACGCATCCTCAGCTCAAAGAGGCTCAAGCTCAAACAGTCGAGGAGGCGGTCTTCGCGATCAATCAGATGAATCGAACTGTGATGGAGATAATGATAGTGATGACGTAATTGAGGGAGGAGGCAAAGAGAATGGAGATCTACCTCACATTCTGGAGCGAATGAATGCGAGATTACTGTGCGGAGAGAGTAGAAAAGACAAGCAACTCATTCATTTGAACGGCAATAGCGAGCATGCAAGCAAACTTAGTTTAGTCAAAGGCCATCATCCTAAATACAGAGCTCATCAAGCTTGTTCTATCCAGAGATTGACGGAGAAAATTCACCATTTTATGTCTAATCGTCGAAAATATTGTGATTATCAGCGCAGACTTGACGGAAGCGGTACT
Protein: 774 (aa)
MRSHKKIKLSQYSAGTMDTTEEDILMASSSPPNGQSKSSDDLGDMTFCMPNYAKEALKMMFMMRQHHMLTDCVLEVDNELFHVHKVVLSSASPYFKAMFTGGLKECEMSRVRLQGVCPTSMAKIITFMYTGKIHVSEVTVCQLLPAATMFQVPNVIEACCAFLERQLDPTNAIGIANFAEQHGCAILRQKANQFIERHFTQICQEEEFLQLSAMQLVNLIRKDELNVQDEREVYNAVLKWVKYDEDNRYPKMEHILYAVRCQFLTPKFLKEQMKNCDVLKRVPACREYLAKIFKDLTLHKRPIVKERKPNTTRMIFVAGGYFQHSLDILEGYNVDDRTWTTLPKLTVPRSGLGAAFLKGTFYAVGGRNNAPGASYDSDWVDRYDPITEQWRPCAPMSVPRNRVGVATMDDFLYAVGGSSGTEYHNSVEYFDPDQDRWFVIAPMRSKRLAVGVAVVNRLLYAIGGFDGENRLASMECYHPENNEWTDMPPMKYPRSGAGVAVLNQYIYVVGGFDGTRQLSSVERFDTDNRTWECVTAMKTSRSALSVNVIDGKLYAMGGYDGTHFLSNVEVYSPVDDVWEDGVPLTSGRSGLASAVIYQPSCPQSFSQDSLLAQHSAHREYEDDGKSEQGSGGGGGSSINFNYSNSNASSAQRGSSSNSRGGGLRDQSDESNCDGDNDSDDVIEGGGKENGDLPHILERMNARLLCGESRKDKQLIHLNGNSEHASKLSLVKGHHPKYRAHQACSIQRLTEKIHHFMSNRRKYCDYQRRLDGSGT
| Type | Start | End | Length |
| CDS |
6096 |
6128 |
33 |
| CDS |
8015 |
8176 |
162 |
| CDS |
8250 |
8342 |
93 |
| CDS |
8428 |
8945 |
518 |
| CDS |
9129 |
9467 |
339 |
| CDS |
9598 |
9738 |
141 |
| CDS |
9811 |
9898 |
88 |
| CDS |
9970 |
10107 |
138 |
| CDS |
10178 |
10333 |
156 |
| CDS |
10429 |
11082 |
654 |
| intron |
6129 |
8014 |
1886 |
| intron |
8177 |
8249 |
73 |
| intron |
8343 |
8427 |
85 |
| intron |
8946 |
9128 |
183 |
| intron |
9468 |
9597 |
130 |
| intron |
9739 |
9810 |
72 |
| intron |
9899 |
9969 |
71 |
| intron |
10108 |
10177 |
70 |
| intron |
10334 |
10428 |
95 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_562507 |
AGAP003645-PA [Anopheles gambiae str. PEST] gb|EAL40607.4| AGAP003645-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR015916 |
Galactose oxidase, beta-propeller |
|
| InterPro |
IPR006652 |
Kelch repeat type 1 |
|
| InterPro |
IPR013069 |
BTB/POZ |
|
| InterPro |
IPR011333 |
BTB/POZ fold |
|
| InterPro |
IPR011705 |
BTB/Kelch-associated |
|
| InterPro |
IPR000210 |
BTB/POZ-like |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF13415.1 |
Galactose oxidase, central domain |
2.4e-27 |
| Pfam |
PF01344.20 |
Kelch motif |
1.1e-79 |
| Pfam |
PF07707.10 |
BTB And C-terminal Kelch |
1.2e-33 |
| Pfam |
PF00651.26 |
BTB/POZ domain |
8.6e-30 |
| Pfam |
PF13418.1 |
Galactose oxidase, central domain |
5e-26 |
| Pfam |
PF07646.10 |
Kelch motif |
6.8e-26 |
| Pfam |
PF13964.1 |
Kelch motif |
2.2e-45 |
| Pfam |
PF13854.1 |
Kelch motif |
5.8e-11 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.14612 |
| Pn.05559 |
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM204950-PA |
| T. castaneum |
TC014075 |
| H. sapiens |
ENSP00000370625 |
| T. castaneum |
TC011771 |
| D. melanogaster |
FBgn0004463 |
| C. quinquefasciatus |
CPIJ007653 |
| A. aegypti |
AAEL017213 |
| P. vanderplanki |
Pv.06150 |
| M. musculus |
ENSMUSG00000034453 |
| B. mori |
BGIBMGA004699-TA |
| N. vitripennis |
NV12818-PA |
| P. vanderplanki |
Pv.09260 |
| H. sapiens |
ENSP00000228347 |
| D. plexippus |
DPOGS203050PA |
| H. sapiens |
ENSP00000171111 |
| S. invicta |
SI2.2.0_13645 |
| C. quinquefasciatus |
CPIJ007655 |
| H. melpomene |
HMEL016153-PA |
| S. invicta |
SI2.2.0_13098 |
| A. aegypti |
AAEL017156 |
| P. humanus |
PHUM105700-PA |
| A. mellifera |
GB16559-PA |
| P. humanus |
PHUM424490-PA |
| A. gambiae |
AGAP012550 |
| A. gambiae |
AGAP003648 |
| H. sapiens |
ENSP00000391096 |
| H. melpomene |
HMEL017204-PA |
| A. gambiae |
AGAP008151 |
| N. vitripennis |
NV10953-PA |
| B. mori |
BGIBMGA014045-TA |
| H. melpomene |
HMEL018033-PA |
| H. sapiens |
ENSP00000468671 |
| D. melanogaster |
FBgn0038475 |
| D. plexippus |
DPOGS211146PA |
| M. musculus |
ENSMUSG00000003308 |
| N. vitripennis |
NV10320-PA |
| M. musculus |
ENSMUSG00000029250 |
| H. sapiens |
ENSP00000391452 |
| H. sapiens |
ENSP00000377245 |
| A. mellifera |
GB13968-PA |
| H. sapiens |
ENSP00000448539 |
| H. sapiens |
ENSP00000445721 |
| S. invicta |
SI2.2.0_06174 |
| A. mellifera |
GB14838-PA |
| C. quinquefasciatus |
CPIJ004871 |
| B. mori |
BGIBMGA003018-TA |
| D. melanogaster |
FBgn0262955 |
| T. castaneum |
TC016270 |
| D. plexippus |
DPOGS207551PA |
| H. sapiens |
ENSP00000312735 |
| A. aegypti |
AAEL005424 |
| A. gambiae |
AGAP003645 |