MidgeBase gene description page [Pn.08968]
Outline
| Gene ID | Pn.08968 |
| Type | Protein coding gene |
| Scaffold | PnScaf8838 |
| Start | 91 |
| End | 2233 |
| Direction | - |
Sequence
Transcript: 1227 (bp)
ATGAAGATTTTGCTAGTTATTATTTGTACCCTTTTATTAGGCTGCATTGCATCCTGTGCTCTTGTAGGACGTAATCAGTGCACATATGGACCCTCATTTTGGTGTGAGAACATAATCAACGCTAAATCTTGTGGAGCTGTGAAGCATTGTATAAAAACCGTTTGGGAAAGGCAACATGTTCCCGAAGACAATGATTCCATCTGTAAGATTTGCCTCGACATGGTTCAACAGGCGAGAGATCAACTCGAGAGTAATGAGACGCAAGAGGAATTGAAGGAAGTTTTTGAAGGATCGTGCGATCTCATCCCGCTTAATGTCGTTAAGAAAGAATGTCGACGTCTCGCTGACGACTTCATTCCGGAGCTTGTGGAAGCTCTCGCGAGTCAAATGAATCCGCAAGTTGTTTGCTCAACCGCCGGTCTCTGTAATAACGCGAAAATTGATGCCTTACTCGAGGAATATGAAGTCCAGAAGAAGCAAAACCTATTGAGCTGCAATCAGTGCAATAACATCGGAAATGTCATCACTCACAAGTTCCACACCTCAAGCCGCGATCAAGTGCTAGACGGATTTTTAAGTGCTTGCGGTCGCCTCTCATCCTTTTCCGATGCGTGCTCCAGCATTATTCTGACTTATTTCAATGAAATTTATGCAGAACTCTCAAGAAATCTAAATTCCGAAAATATCTGCCACATGTCGGGTGTGTGCGCAAGTAAATTCCACACACACGATGCAACTGTTGAGGTTCGGCCAAAATCGAATGTTGGAGTTCTGAAAAACCGAGAACTGACTGACGACATTCCATGTGAATTATGCGAGCAATTGGTGAAGCACTTACGAGATATTTTAGTTGCTAACACAACTGAAATCGAATTCAAGAGCGTTCTTGAAGGTCTTTGCAGTCAAACGAAGGGATTCAAAAAAGAATGCCTTAGCTTGGTCGACCAGTACTACTCAATTATTTATGAGACTCTCGTTAATAATCTTGACGCGAATGGCGCTTGCTTTTTAATTGGAGTATGTCGTAAGGGAGATAATCACGCAATCGTCGCTCCGCACATGCCGTTGCTGCCTTCTAATCAAGTAATTCCGAAGCGCAAACGCTTGGGTGAGAACGAAAAACTCTACACAAACGAAGAAATCAAGAAAATGGTGTTGCCAATTGATCAGCTGATGGGCGCAAAGTCCAGTCTCGGACTGGTGGACGGTGGAGGCTCAGGACTACAT
Protein: 409 (aa)
MKILLVIICTLLLGCIASCALVGRNQCTYGPSFWCENIINAKSCGAVKHCIKTVWERQHVPEDNDSICKICLDMVQQARDQLESNETQEELKEVFEGSCDLIPLNVVKKECRRLADDFIPELVEALASQMNPQVVCSTAGLCNNAKIDALLEEYEVQKKQNLLSCNQCNNIGNVITHKFHTSSRDQVLDGFLSACGRLSSFSDACSSIILTYFNEIYAELSRNLNSENICHMSGVCASKFHTHDATVEVRPKSNVGVLKNRELTDDIPCELCEQLVKHLRDILVANTTEIEFKSVLEGLCSQTKGFKKECLSLVDQYYSIIYETLVNNLDANGACFLIGVCRKGDNHAIVAPHMPLLPSNQVIPKRKRLGENEKLYTNEEIKKMVLPIDQLMGAKSSLGLVDGGGSGLH
| Type | Start | End | Length |
| CDS |
94 |
110 |
17 |
| CDS |
449 |
1259 |
811 |
| CDS |
1340 |
1622 |
283 |
| CDS |
1985 |
2060 |
76 |
| CDS |
2194 |
2233 |
40 |
| intron |
111 |
448 |
338 |
| intron |
1260 |
1339 |
80 |
| intron |
1623 |
1984 |
362 |
| intron |
2061 |
2193 |
133 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001662994 |
saposin [Aedes aegypti] gb|EAT45724.1| saposin [Aedes aegypti] |
1e-137 |
| InterPro |
IPR008139 |
Saposin B |
|
| InterPro |
IPR011001 |
Saposin-like |
|
| InterPro |
IPR007856 |
Saposin-like type B, 1 |
|
| InterPro |
IPR008138 |
Saposin-like type B, 2 |
|
| InterPro |
IPR008373 |
Saposin |
|
| InterPro |
IPR003119 |
Saposin type A |
|
| Gene Ontology(BP) |
GO:0006665 |
sphingolipid metabolic process |
|
| Gene Ontology(BP) |
GO:0006629 |
lipid metabolic process |
|
| Gene Ontology(CC) |
GO:0005764 |
lysosome |
|
| Pfam |
PF03489.12 |
Saposin-like type B, region 2 |
2.2e-21 |
| Pfam |
PF01480.12 |
PWI domain |
0.14 |
| Pfam |
PF05184.10 |
Saposin-like type B, region 1 |
3.8e-16 |
| Pfam |
PF02199.10 |
Saposin A-type domain |
7.3e-16 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA014221-TA |
| P. humanus |
PHUM424520-PA |
| M. musculus |
ENSMUSG00000004207 |
| H. sapiens |
ENSP00000378392 |
| H. melpomene |
HMEL012805-PA |
| H. sapiens |
ENSP00000362212 |
| A. gambiae |
AGAP001082 |
| D. melanogaster |
FBgn0000416 |
| A. mellifera |
GB16561-PA |
| B. mori |
BGIBMGA010419-TA |
| A. aegypti |
AAEL003046 |
| S. invicta |
SI2.2.0_15287 |
| D. plexippus |
DPOGS200483PA |
| H. sapiens |
ENSP00000378394 |
| P. vanderplanki |
Pv.09582 |
| C. quinquefasciatus |
CPIJ014133 |
| P. vanderplanki |
Pv.02860 |
| T. castaneum |
TC000449 |
| N. vitripennis |
NV14752-PA |