MidgeBase gene description page [Pn.08913]
Outline
| Gene ID | Pn.08913 |
| Type | Protein coding gene |
| Scaffold | PnScaf8778 |
| Start | 4011 |
| End | 7448 |
| Direction | + |
Sequence
Transcript: 1776 (bp)
ATGTACAAGAGAATCCGCCAAACGAAGCCAGTCCTCGATCTGTATGCCGAGCAGCTGATCAAGGAAGGAGTCGTCACCGCCGAGGAGGTGAAATCGGTCAAGGACAAGTACACGAAGATTTGCGAGGAGGCATTTGAGCAGGCGAAGGTCGAGACCCACGTCAAGTACAAGGACTGGTTGGACTCACCGTGGTCGGGCTTCTTCGAGGGCAAGGACCCACTGAAGGTCTCGCCGACTGGCGTGCCCGAAGAGACACTGATTCACATCGGCAACCGCTTTTCGTCGCCGCCACCAAACGCTGCCGAGTTCATCATCCACAAGGGTTTGCTGCGTGTGCTCGCGAGCCGCAAAGACATGGTCGACGCCCGCGTTGTCGACTGGGCGATGGCCGAAGCGATGGCTTTCGGCTCGCTGATGCGCGAAGGAATTCACGTCCGATTGTCGGGCCAGGATGTCGAGCGTGGCACGTTCTCGCATCGTCACCACGTGCTCCACCATCAAGAGGTCGACAAGGCGACTTACCGTCCCCTCAACCACTTGTACCCAGACCAGGCGCCATACACGGTTTGCAACAGCTCGCTGTCAGAGTACGGCGTGCTCGGCTTCGAGCTGGGCTACAGCATGACAAACCCCAACGCACTCGTGTGCTGGGAGGCGCAATTCGGTGACTTCAACAACACGGCCCAGTGCATCATCGATCAGTTCATCAGCTCGGGACAAGCGAAGTGGGTGCGTCAGAGCGGCTTGGTCATGCTCTTGCCGCACGGCATGGAGGGTATGGGACCGGAGCACTCGTCGGCTCGCTTGGAGCGCTTCCTCCAAATGTCGTCCGACGATCCCGACTACTTCCCGCCCGAAAGCGACGAGTTCGCCATTCGCCAGCTCCACGACATCAACTGGATTGTTGCCAACTGCTCAACCCCAGCCAACTATTTCCACATTCTCCGACGACAGATTGCGATGCCCTTCAGAAAGCCGCTCGTGGTCATGACACCAAAGAGCTTGCTGAGACATCCGGAGTGCAAGAGCAACTTCTCAGAAATGGTCGACAACACCGAGTTCAAACGCGTCATTGCCGAGAAGGGACCAGCAGCGGAGAACCCAAGCGGCGTCAAGCGCTTGATCTTCTGCAGCGGAAGGGTTTACTACGATCTGATCAAGGCCCGTCGCGAGAAGGGTCTGGACAACGAAATCGCCATTAGCACTGTTGAGCAGATTACGCCTTTCCCGTATGACTTGGTGAGAGCTGAATGCGCGAAATACCCGAATGCTGAAATCTGCTGGGCTCAAGAGGAGCACAAGAACCAGGGAGCATGGAACTACGTCTTGCCTCGCTTCAACACTAGCTTGAATGCTAGCCGCGGCGTTGGCTATGCATCGACGGATGATTCAATCACCAACACAGAGACGACTGTGAAAAATCGGGATGATGACATGAATGCGTCACAGAAAAATGTTGAGAAAGCGACAAAGCGAAAGCAGCTGGAGCACAAGGAAAAGTCCTTCTGGCGCAGCTGGTTTAGCTTTGGCGCACTTTCCGACGATGAAACACGCGGCGCTAATGTCACCATGAGCACACGTAAATCGAGTGCATGCAGTTACGTCAACTTCAATGCCCCAAGTCCTGACGAAGCTAAATATGCTAAAGCACATTCAAGCTCATCATATAGAGCGCTTAGCTACATTGGACGTCCATGCGCAGCATCAACTGCAACAGGTTCAAAGGCTCAACACATCCGCGAGCTCAACAACTTCTTGACCGAAGCAACAACCCTC
Protein: 592 (aa)
MYKRIRQTKPVLDLYAEQLIKEGVVTAEEVKSVKDKYTKICEEAFEQAKVETHVKYKDWLDSPWSGFFEGKDPLKVSPTGVPEETLIHIGNRFSSPPPNAAEFIIHKGLLRVLASRKDMVDARVVDWAMAEAMAFGSLMREGIHVRLSGQDVERGTFSHRHHVLHHQEVDKATYRPLNHLYPDQAPYTVCNSSLSEYGVLGFELGYSMTNPNALVCWEAQFGDFNNTAQCIIDQFISSGQAKWVRQSGLVMLLPHGMEGMGPEHSSARLERFLQMSSDDPDYFPPESDEFAIRQLHDINWIVANCSTPANYFHILRRQIAMPFRKPLVVMTPKSLLRHPECKSNFSEMVDNTEFKRVIAEKGPAAENPSGVKRLIFCSGRVYYDLIKARREKGLDNEIAISTVEQITPFPYDLVRAECAKYPNAEICWAQEEHKNQGAWNYVLPRFNTSLNASRGVGYASTDDSITNTETTVKNRDDDMNASQKNVEKATKRKQLEHKEKSFWRSWFSFGALSDDETRGANVTMSTRKSSACSYVNFNAPSPDEAKYAKAHSSSSYRALSYIGRPCAASTATGSKAQHIRELNNFLTEATTL
| Type | Start | End | Length |
| CDS |
4011 |
5077 |
1067 |
| CDS |
5189 |
5336 |
148 |
| CDS |
5407 |
5561 |
155 |
| CDS |
6152 |
6328 |
177 |
| CDS |
6404 |
6535 |
132 |
| CDS |
7349 |
7445 |
97 |
| intron |
5078 |
5188 |
111 |
| intron |
5337 |
5406 |
70 |
| intron |
5562 |
6151 |
590 |
| intron |
6329 |
6403 |
75 |
| intron |
6536 |
7348 |
813 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001688856 |
AGAP006366-PA [Anopheles gambiae str. PEST] gb|EDO63862.1| AGAP006366-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR011603 |
2-oxoglutarate dehydrogenase, E1 component |
|
| InterPro |
IPR001017 |
Dehydrogenase, E1 component |
|
| InterPro |
IPR005475 |
Transketolase-like, pyrimidine-binding domain |
|
| Gene Ontology(BP) |
GO:0006099 |
tricarboxylic acid cycle |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0004591 |
oxoglutarate dehydrogenase (succinyl-transferring) activity |
|
| Gene Ontology(MF) |
GO:0016624 |
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor |
|
| Gene Ontology(MF) |
GO:0030976 |
thiamine pyrophosphate binding |
|
| Pfam |
PF00676.15 |
Dehydrogenase E1 component |
5e-08 |
| Pfam |
PF02779.19 |
Transketolase, pyrimidine binding domain |
1.1e-70 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.07930 |
| Pn.08912 |
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL005429 |
| B. mori |
BGIBMGA006311-TA |
| D. melanogaster |
FBgn0039827 |
| A. mellifera |
GB13923-PA |
| H. melpomene |
HMEL010125-PA |
| N. vitripennis |
NV12866-PA |
| H. sapiens |
ENSP00000263035 |
| H. sapiens |
ENSP00000398576 |
| A. aegypti |
AAEL006721 |
| H. sapiens |
ENSP00000390240 |
| C. quinquefasciatus |
CPIJ007338 |
| T. castaneum |
TC008732 |
| H. sapiens |
ENSP00000392878 |
| S. invicta |
SI2.2.0_08248 |
| H. sapiens |
ENSP00000222673 |
| D. plexippus |
DPOGS208941PA |
| D. melanogaster |
FBgn0035240 |
| H. sapiens |
ENSP00000363216 |
| T. castaneum |
TC030624 |
| P. vanderplanki |
Pv.00465 |
| A. gambiae |
AGAP000551 |
| M. musculus |
ENSMUSG00000021913 |
| D. plexippus |
DPOGS202452PA |
| S. invicta |
SI2.2.0_11249 |
| C. quinquefasciatus |
CPIJ017085 |
| M. musculus |
ENSMUSG00000025815 |
| P. humanus |
PHUM304130-PA |
| D. plexippus |
DPOGS210696PA |
| A. gambiae |
AGAP006366 |
| A. mellifera |
GB12855-PA |
| P. humanus |
PHUM315960-PA |
| H. sapiens |
ENSP00000388183 |
| H. sapiens |
ENSP00000414662 |
| A. mellifera |
GB15468-PA |
| B. mori |
BGIBMGA002883-TA |
| P. vanderplanki |
Pv.13880 |
| P. vanderplanki |
Pv.07252 |
| B. mori |
BGIBMGA009974-TA |
| T. castaneum |
TC012622 |
| P. humanus |
PHUM601630-PA |
| H. sapiens |
ENSP00000443821 |
| H. sapiens |
ENSP00000401356 |
| H. sapiens |
ENSP00000388084 |
| D. melanogaster |
FBgn0010352 |
| N. vitripennis |
NV17458-PA |