MidgeBase gene description page [Pn.08885]
Outline
| Gene ID | Pn.08885 |
| Type | Protein coding gene |
| Scaffold | PnScaf8739 |
| Start | 26094 |
| End | 27348 |
| Direction | + |
Sequence
Transcript: 1179 (bp)
ATGACTGAACAAGTTGAAGCCGCTGCACCCGCAGACGCAGTTGAAAACAAATCAGAAGAGAATGGTGGCTCACAGGAAACAAATTTCACCCCACAGGAAGCCGAAATAATCAGACAAGTCGAGTATTATTTTGGCGAGAGCAATTTGCGACGCGACAAGTTCCTCCTCGGTAAAATCGCAGAAAACGAAGAAGGATGGGTTCCTATCAGCGTCCTCACAACTTTCCATCGGTTGAAGGCTCTCTCAGAGGACGCAGCATTTATTGCCGAAACAGTGGAGAAGTCAGTCAACGGCCTCGTGCAAGTCAGTGAAGATAAACAGAAAATTCGCCGCCATCCCGAAAATCCGCTACCTGAGTTCAACGAAGAGCGTCGCAAAGAGTTACAAGGGAGAACGGCATACGCCAAAGGCTTCCCTCTCGACTCGACCATGAACGTCTTGGTCGAGTATTTCAACAACAATTTTGAGAATGTGGAGAACGTTGTGATGAGAAAGTATTTCTGTCAAACGAGCAAGCAACACATGTTCAAAGGCTCAGTTTTCGTACTGTTCAAAACAAAGGAGGCGGCCGAGGAGTTTGTCAAGCGACCGGAACTTAAATATGGCGAGAAGGAACTTTTGCGTTACATGCAGGCAGAATATATCGAGGTGAAGAAGAACGAGAAGTCAAAGAACGACAAGAAAAAGAAGAAGCAAGAGGAAGAGGATCCGATTGTTTTGCCCAAAAATGCCGTCGTTCATTTCAGCGGAGTTGAGGGTGACATTATGCGAGAGGATATTAAGAAGCGCGTTGCAGAGATCGACCCAGCACTCGTCATTGCATTTATTCACTTTGAGCGAGGACAAAAAGAGGGACAGATTCGATTCTCAAAGGAGGACGACGGAAAAAAGTTTGTTGAGAAACTCGAGGGTGGAAAGATGAAGCTGAAAGAACTGGAGCTTCCAGTGTCGCTCGTTGAGGGCGAAGAAGAGGAGACATTCTTGAAGACCGCCATCGAGGACATGCGTAAGGCACGTCAACGCATGCAACAGAAAAATCACAAAGGACGAAAAGGCGGACGGTTTGATCGAAACGATCGTAAACGCAAAAACGAGGACAGAAATGATGAAGAAGCCGCAGACGCAAAACAAGCGAAGACCGATACCGAAGAAGTTGCCGTTATCGAGGCAACAGCTGAT
Protein: 393 (aa)
MTEQVEAAAPADAVENKSEENGGSQETNFTPQEAEIIRQVEYYFGESNLRRDKFLLGKIAENEEGWVPISVLTTFHRLKALSEDAAFIAETVEKSVNGLVQVSEDKQKIRRHPENPLPEFNEERRKELQGRTAYAKGFPLDSTMNVLVEYFNNNFENVENVVMRKYFCQTSKQHMFKGSVFVLFKTKEAAEEFVKRPELKYGEKELLRYMQAEYIEVKKNEKSKNDKKKKKQEEEDPIVLPKNAVVHFSGVEGDIMREDIKKRVAEIDPALVIAFIHFERGQKEGQIRFSKEDDGKKFVEKLEGGKMKLKELELPVSLVEGEEEETFLKTAIEDMRKARQRMQQKNHKGRKGGRFDRNDRKRKNEDRNDEEAADAKQAKTDTEEVAVIEATAD
| Type | Start | End | Length |
| CDS |
26094 |
27011 |
918 |
| CDS |
27085 |
27345 |
261 |
| intron |
27012 |
27084 |
73 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001962254 |
GF15376 [Drosophila ananassae] gb|EDV31475.1| GF15376 [Drosophila ananassae] |
1e-74 |
| InterPro |
IPR011991 |
Winged helix-turn-helix transcription repressor DNA-binding |
|
| InterPro |
IPR006630 |
RNA-binding protein Lupus La |
|
| InterPro |
IPR002344 |
Lupus La protein |
|
| InterPro |
IPR000504 |
RNA recognition motif domain |
|
| InterPro |
IPR012677 |
Nucleotide-binding, alpha-beta plait |
|
| InterPro |
IPR014886 |
RNA-binding motif |
|
| Gene Ontology(BP) |
GO:0006396 |
RNA processing |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(CC) |
GO:0030529 |
ribonucleoprotein complex |
|
| Gene Ontology(MF) |
GO:0003723 |
RNA binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF00076.17 |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
0.00027 |
| Pfam |
PF08777.6 |
RNA binding motif |
4.3e-18 |
| Pfam |
PF01201.17 |
Ribosomal protein S8e |
0.56 |
| Pfam |
PF05383.12 |
La domain |
2.2e-22 |
| Pfam |
PF14259.1 |
RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) |
1.1e-07 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL016495-PA |
| T. castaneum |
TC013519 |
| P. vanderplanki |
Pv.06846 |
| C. quinquefasciatus |
CPIJ802402 |
| B. mori |
BGIBMGA006022-TA |
| N. vitripennis |
NV15183-PA |
| D. melanogaster |
FBgn0011638 |
| D. plexippus |
DPOGS211838PA |
| A. mellifera |
GB14277-PA |
| A. gambiae |
AGAP008952 |
| A. aegypti |
AAEL003664 |
| H. sapiens |
ENSP00000397029 |
| P. humanus |
PHUM074530-PA |
| H. sapiens |
ENSP00000386636 |
| S. invicta |
SI2.2.0_10926 |
| H. sapiens |
ENSP00000260956 |
| M. musculus |
ENSMUSG00000068882 |
| H. sapiens |
ENSP00000386524 |