MidgeBase gene description page [Pn.08874]
Outline
| Gene ID | Pn.08874 |
| Type | Protein coding gene |
| Scaffold | PnScaf8739 |
| Start | 1811 |
| End | 5041 |
| Direction | + |
Sequence
Transcript: 1329 (bp)
ATGAGGCAGCGTAGAAACTCGCCGTCAGTCATCAACAGTTGTGTTAAGAAAATGTCTGTGATATTAATGTTACTCGCACTCTCATCGACCGTGAATGCACTCGATAATGGCCTCGCACGCACACCGCCCATGGGATGGCTGAGTTGGGAACGGTTTCGGTGCAACACAGACTGCGAAAATGATCCCGACAATTGCATAAGCGAAAATCTATTTCGCACAATGTCAGACTTGGTGGTGTCTGAAGGATATGCAGCCGTAGGCTACGAGTATATTAATGTCGACGACTGCTGGCTGGAGAAGAATCGCGGACCGCGTGGAGAGCTGGTGGCCGACCGCAAGAGATTCCCAAGCGGAATGCGCGCACTTGCAGACTATGTTCACAGCAAAGGTCTCAAGTTCGGCATTTACGAGGACTACGGCAACTACACATGCGCTGGCTATCCCGGCATTTTAGGCTCTTCGCAGCAGGACGCTCAGCAATTTGCCTCCTGGGACGTCGACTATGTTAAATTAGACGGATGCTACTCGCTGCCCACTGACATGGACATTGGATATCCTGAGTTCGGACGCCACTTGAACAAAACTGGCCGACCGATGATCTACAGCTGCAGCTGGCCAGTCTACCAGATCTATGCGGGCATAAGCCCAAACTTCTCGTCAATCATCGAGCACTGCAACTTGTGGAGAAATTTCGATGACATTCAAGACTCGTGGGCCTCGCTCGAGAGCATCATCGACTATTATGGCAACAACCAGGATTACATCATTCCAAATGCTGGTCCCGGTCACTGGAACGATCCCGATATGCTGATCATTGGCAATTTCGGGCTGAGTTATGAGCAGTCGAAGACGCAAATGGCGTTGTGGGCAATTCTCGCTGCACCTCTTCTCATGTCAGTCGACTTGCGAACAATACGCCCCGAGTATAAGGCAATCCTACAAAATAGGAAGATCATTGCGGTCGACCAAGATCCGCTGGGAATCCAAGGTCGAAGAATTTACAAGCATAAAGGCATCGAGATCTGGTCACGACCGATCACTCCAATTTATCAGACCTACTACTCATATGCCGTTGCCTTCGTCAATCGCCGCACTGACGGCACTCCATCCGACGTCGCTGTTACATTGCGTGAGCTCGGCCTGCAATCACCTACTGGCTATCGTGTCGAGGACTTGTACGAAGACGTTGACTACGGCATTCTGTCACCAAACACAAAGATTAAGGTCAAAGTCAATCCGTCGGGCGTGGTCATTTTGCGTGCCGATGTTCAACCTGAGAGATTTTCGAAGCGTCCACTCAATCCTTACTACTACCGCTATAATCAGAAG
Protein: 443 (aa)
MRQRRNSPSVINSCVKKMSVILMLLALSSTVNALDNGLARTPPMGWLSWERFRCNTDCENDPDNCISENLFRTMSDLVVSEGYAAVGYEYINVDDCWLEKNRGPRGELVADRKRFPSGMRALADYVHSKGLKFGIYEDYGNYTCAGYPGILGSSQQDAQQFASWDVDYVKLDGCYSLPTDMDIGYPEFGRHLNKTGRPMIYSCSWPVYQIYAGISPNFSSIIEHCNLWRNFDDIQDSWASLESIIDYYGNNQDYIIPNAGPGHWNDPDMLIIGNFGLSYEQSKTQMALWAILAAPLLMSVDLRTIRPEYKAILQNRKIIAVDQDPLGIQGRRIYKHKGIEIWSRPITPIYQTYYSYAVAFVNRRTDGTPSDVAVTLRELGLQSPTGYRVEDLYEDVDYGILSPNTKIKVKVNPSGVVILRADVQPERFSKRPLNPYYYRYNQK
| Type | Start | End | Length |
| CDS |
1811 |
2010 |
200 |
| CDS |
3451 |
3625 |
175 |
| CDS |
3695 |
3868 |
174 |
| CDS |
3945 |
4040 |
96 |
| CDS |
4121 |
4265 |
145 |
| CDS |
4345 |
4533 |
189 |
| CDS |
4621 |
4811 |
191 |
| CDS |
4880 |
5038 |
159 |
| intron |
2011 |
3450 |
1440 |
| intron |
3626 |
3694 |
69 |
| intron |
3869 |
3944 |
76 |
| intron |
4041 |
4120 |
80 |
| intron |
4266 |
4344 |
79 |
| intron |
4534 |
4620 |
87 |
| intron |
4812 |
4879 |
68 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001650906 |
alpha-galactosidase/alpha-n-acetylgalactosaminidase [Aedes aegypti] gb|EAT43068.1| alpha-galactosidase/alpha-n-acetylgalactosaminidase [Aedes aegypti] |
0.0 |
| InterPro |
IPR002241 |
Glycoside hydrolase, family 27 |
|
| InterPro |
IPR013785 |
Aldolase-type TIM barrel |
|
| InterPro |
IPR013780 |
Glycosyl hydrolase, family 13, all-beta |
|
| InterPro |
IPR000111 |
Glycoside hydrolase, clan GH-D |
|
| InterPro |
IPR017853 |
Glycoside hydrolase, superfamily |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(MF) |
GO:0043169 |
cation binding |
|
| Gene Ontology(MF) |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF02065.13 |
Melibiase |
2.3e-16 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0034117 |
| C. quinquefasciatus |
CPIJ002066 |
| M. musculus |
ENSMUSG00000022453 |
| H. melpomene |
HMEL012586-PA |
| H. sapiens |
ENSP00000385283 |
| H. melpomene |
HMEL014237-PA |
| D. plexippus |
DPOGS214376PA |
| H. sapiens |
ENSP00000379680 |
| A. gambiae |
AGAP005846 |
| A. aegypti |
AAEL005460 |
| H. sapiens |
ENSP00000384603 |
| P. humanus |
PHUM061380-PA |
| A. gambiae |
AGAP009621 |
| D. melanogaster |
FBgn0032192 |
| P. vanderplanki |
Pv.14486 |
| P. vanderplanki |
Pv.03378 |
| A. aegypti |
AAEL005188 |
| T. castaneum |
TC007420 |
| A. mellifera |
GB10294-PA |
| H. sapiens |
ENSP00000218516 |
| D. plexippus |
DPOGS213240PA |
| N. vitripennis |
NV15651-PA |
| T. castaneum |
TC009636 |
| T. castaneum |
TC009634 |
| B. mori |
BGIBMGA004000-TA |
| T. castaneum |
TC009635 |
| S. invicta |
SI2.2.0_01689 |
| C. quinquefasciatus |
CPIJ005600 |
| P. humanus |
PHUM476700-PA |