MidgeBase gene description page [Pn.08851]
Outline
| Gene ID | Pn.08851 |
| Type | Protein coding gene |
| Scaffold | PnScaf8659 |
| Start | 30954 |
| End | 31514 |
| Direction | - |
Sequence
Transcript: 423 (bp)
ATGAATTTTCTAAATAATTTAAAAACTTTACTAACAACGTCAAGCGCATTTACAAACTCTGTAAGGAACGCTAGTAAGAAAACCAGTGGAAGTACTCGAAATCCCAAGAACCCCCACGGAAGACCAAAACATCGAGGTTGGAAAAGACAAGAGGGTCATAATGTTACAACAGGAACTATTTTAGCACTTCAAACTAAGCCTCGCTTCTTTCCTGGACTCAATGTCGGTTTTGGCAAAAATGGAACGCTTTATGCAATGACAAATGGACGAGTTTATGTGTCTTGCGAAAGGGTGGATTTAAACTGGGATCATAGTTGGATTCAAAGAAATTTTGCTGGAAGACATGATCAAACTATCTACAAAAAATATTTTAATGTCGTTCCCGACCCACCACATAAACGCTTTCGTTTGGTTGATGAGAAC
Protein: 141 (aa)
MNFLNNLKTLLTTSSAFTNSVRNASKKTSGSTRNPKNPHGRPKHRGWKRQEGHNVTTGTILALQTKPRFFPGLNVGFGKNGTLYAMTNGRVYVSCERVDLNWDHSWIQRNFAGRHDQTIYKKYFNVVPDPPHKRFRLVDEN
| Type | Start | End | Length |
| CDS |
30957 |
31157 |
201 |
| CDS |
31231 |
31330 |
100 |
| CDS |
31393 |
31514 |
122 |
| intron |
31158 |
31230 |
73 |
| intron |
31331 |
31392 |
62 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002087933 |
GE14710 [Drosophila yakuba] gb|EDW87645.1| GE14710 [Drosophila yakuba] |
3e-46 |
| InterPro |
IPR001684 |
Ribosomal protein L27 |
|
| Gene Ontology(BP) |
GO:0006412 |
translation |
|
| Gene Ontology(CC) |
GO:0005840 |
ribosome |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0003735 |
structural constituent of ribosome |
|
| Pfam |
PF01016.14 |
Ribosomal L27 protein |
8.8e-20 |
| Pfam |
PF02290.10 |
Signal recognition particle 14kD protein |
0.049 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000225969 |
| P. humanus |
PHUM128630-PA |
| P. vanderplanki |
Pv.07318 |
| B. mori |
BGIBMGA000882-TA |
| N. vitripennis |
NV11374-PA |
| A. mellifera |
GB14894-PA |
| H. sapiens |
ENSP00000424321 |
| A. aegypti |
AAEL002418 |
| M. musculus |
ENSMUSG00000024414 |
| D. plexippus |
DPOGS211935PA |
| T. castaneum |
TC000079 |
| D. melanogaster |
FBgn0053002 |
| H. melpomene |
HMEL005335-PA |
| A. gambiae |
AGAP002470 |
| C. quinquefasciatus |
CPIJ013741 |