MidgeBase gene description page [Pn.08784]
Outline
| Gene ID | Pn.08784 |
| Type | Protein coding gene |
| Scaffold | PnScaf8586 |
| Start | 4694 |
| End | 7261 |
| Direction | + |
Sequence
Transcript: 1743 (bp)
ATGAACGTGGACGAGTTGAAAAGTTCGTTGAAACAATTCAGGACAATCGACCAAGTGGTGTTCGGTGCAATGCTGTGTATGTGTTCGTTGATTGGTCTCTACTTCGGCTATCAAGATCTTAGGAGGAAAAAGCAAAGCGACAAGACCTTGAATTTTTTAATGGGCGGAAGAAAAATGAAAGTCTTTCCCGTTGCGATGTCGCTTATTGCATCACTAGTTTCGGGGATCTTGCTGCTGGGAGCGAGCACGGAAATTTATCTTTATGGCACTCAGTACATTTATATTCTCATCGCCATTATCATCTCTGCTATCGTACTCGACCTTGTTATGATACCCATCTTCCATAGTCTTCAAATAACGTCTGTTTATGAGTATTTGGAGCTGAGATTTGATAAGAGAATGCGTTTATTTGGCTCGCTAATGTACACAATTTCGAGCATTTTGTGGCTGCCCATTGTTTTGTATGTGCCCGCGCTGGCATTCAATCAAATGACAGACATAAATATTCACACGATAACGCCAATCGTTATGGCCGTGTGTCTCTTCTATTGCTGTCTCGGCGGCATGAAAGCCGTTGTGTACACGGACTTCATTCAAATCATTATAATGTACGGGACATTAGCCGTAATCGCAATCAAAGGCACATTGAACGCAGGCGGGCTCACGAAAGTTATTGAAAGGAGCCTTGAGAGCGGCCGCTTTGAAACGCCCAACCTCGACGTGGATCCGACAGTGCGTCATTCGTTTTGGACGTTGGTCGTTGGTGGCACCTTTCTCTACACATCGCACAACGCTCTCAATCAGAACATGATGCAGAGATATTTGGCGCTGCGGACAGTGGGGGAGGCACGTCGAAGCAACCTGATATACGCCATCGGAATGGTCGTGATGATTTCGCTGTGCTGCTACAACGGACTCTTGCTCTACGCCACATACCACGACTGCGACCCACTGACCACGAAATTGGCGGTCGCGCGTGACCAAATGTTGCCGCTCCTCGTGATGCAAACCTTCGACGACATGCCGGGGCTGTCGGGGTTCTTTATTGCCGGAATTTTCTCGGCCGCTCTCAGCTCCATATCGACAGGCCTGAACTCGATGGCGTGTGTCTTTCTCGAGGACTTTGTGAAGGCATTTCGTGCCGACAAGAAGAAGAAGTTGTCGGAAACAGCGAGCACTGTGATAACGAGAGCGGTTGTCGTGGTGTTTGGCGTGCTTGGCATAGCTCTCGTCTATGTGGTTCAGAATTTGGGGACGATTCTGCAGCTGACACTCAGCGTTCCGACGGCGTGCTTCGGTCCGCTCTTCGGTGTCTACATCGTCGGATTCTTCTTGCCATGGGTGAGCAAGCGGGCCACATTCTTCTCGAGTGTAATTGGATTCGTCACAATGATGGCCTATGTGTTCAAAGTTCAGGCCGAGATAGCTCTGCGTCGCATCAATTTCGCCATCAAGCCGGTGTCTGTTGAGGGCTGCAATTACACGTTCGACGGCTCAATCTCGCAAGCGACAATCGTTGCAAACGATGACTCTTCGTCATCAGCCAGCATTTATCACATTTCTTACCTCTATTACACGCTCATCGGATGCACGATTGTTGTTCTGCTGTCGATTTCGTTAACCTTCTTTTTCGGGTGCGAGAAATCGAGCGAAATCGATCAGAGGCTGTTGGCGTCGTGCGCAAGGAGCAAAAAAGAGAGTGAAGACATCAAAATGGCAAGCGTCGAAGTAAACACACAGCTT
Protein: 581 (aa)
MNVDELKSSLKQFRTIDQVVFGAMLCMCSLIGLYFGYQDLRRKKQSDKTLNFLMGGRKMKVFPVAMSLIASLVSGILLLGASTEIYLYGTQYIYILIAIIISAIVLDLVMIPIFHSLQITSVYEYLELRFDKRMRLFGSLMYTISSILWLPIVLYVPALAFNQMTDINIHTITPIVMAVCLFYCCLGGMKAVVYTDFIQIIIMYGTLAVIAIKGTLNAGGLTKVIERSLESGRFETPNLDVDPTVRHSFWTLVVGGTFLYTSHNALNQNMMQRYLALRTVGEARRSNLIYAIGMVVMISLCCYNGLLLYATYHDCDPLTTKLAVARDQMLPLLVMQTFDDMPGLSGFFIAGIFSAALSSISTGLNSMACVFLEDFVKAFRADKKKKLSETASTVITRAVVVVFGVLGIALVYVVQNLGTILQLTLSVPTACFGPLFGVYIVGFFLPWVSKRATFFSSVIGFVTMMAYVFKVQAEIALRRINFAIKPVSVEGCNYTFDGSISQATIVANDDSSSSASIYHISYLYYTLIGCTIVVLLSISLTFFFGCEKSSEIDQRLLASCARSKKESEDIKMASVEVNTQL
| Type | Start | End | Length |
| CDS |
4694 |
4931 |
238 |
| CDS |
5025 |
5158 |
134 |
| CDS |
5310 |
5393 |
84 |
| CDS |
5485 |
5741 |
257 |
| CDS |
6229 |
7258 |
1030 |
| intron |
4932 |
5024 |
93 |
| intron |
5159 |
5309 |
151 |
| intron |
5394 |
5484 |
91 |
| intron |
5742 |
6228 |
487 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_321095 |
AGAP001966-PA [Anopheles gambiae str. PEST] gb|EAA00905.5| AGAP001966-PA [Anopheles gambiae str. PEST] |
1e-161 |
| InterPro |
IPR019900 |
Sodium/solute symporter, subgroup |
|
| InterPro |
IPR001734 |
Sodium/solute symporter |
|
| Gene Ontology(BP) |
GO:0006810 |
transport |
|
| Gene Ontology(BP) |
GO:0055085 |
transmembrane transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005215 |
transporter activity |
|
| Pfam |
PF00474.12 |
Sodium:solute symporter family |
1.5e-36 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.09276 |
| Pn.09277 |
| Pn.11012 |
| Pn.09159 |
| Pn.15325 |
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL012691 |
| A. gambiae |
AGAP001965 |
| S. invicta |
SI2.2.0_07634 |
| C. quinquefasciatus |
CPIJ002533 |
| N. vitripennis |
NV16434-PA |
| C. quinquefasciatus |
CPIJ010265 |
| P. vanderplanki |
Pv.00738 |
| D. melanogaster |
FBgn0029950 |
| P. vanderplanki |
Pv.02849 |
| A. aegypti |
AAEL007016 |
| H. melpomene |
HMEL025039-PA |
| C. quinquefasciatus |
CPIJ002534 |
| A. gambiae |
AGAP001550 |
| C. quinquefasciatus |
CPIJ013621 |
| A. aegypti |
AAEL007027 |
| P. vanderplanki |
Pv.08537 |
| H. melpomene |
HMEL015935-PA |
| A. gambiae |
AGAP013429 |
| A. gambiae |
AGAP013403 |
| C. quinquefasciatus |
CPIJ002532 |
| A. gambiae |
AGAP001185 |
| D. plexippus |
DPOGS201471PA |
| A. aegypti |
AAEL006487 |
| P. vanderplanki |
Pv.06832 |
| B. mori |
BGIBMGA000687-TA |
| P. vanderplanki |
Pv.04621 |
| A. aegypti |
AAEL006995 |
| D. melanogaster |
FBgn0037895 |
| A. mellifera |
GB14022-PA |
| T. castaneum |
TC013745 |
| N. vitripennis |
NV12098-PA |
| P. vanderplanki |
Pv.14273 |
| P. humanus |
PHUM084910-PA |
| P. vanderplanki |
Pv.07020 |
| P. vanderplanki |
Pv.04620 |
| A. gambiae |
AGAP001966 |
| D. melanogaster |
FBgn0250757 |
| B. mori |
BGIBMGA002623-TA |