MidgeBase gene description page [Pn.08774]
Outline
| Gene ID | Pn.08774 |
| Type | Protein coding gene |
| Scaffold | PnScaf8580 |
| Start | 2426 |
| End | 4552 |
| Direction | + |
Sequence
Transcript: 396 (bp)
ATGGCTGTTTGGGAAGGCAAGAAATACAAATTGGACAGACAAGAGAACTTCGAGGAATATATGAAGGCACTAGGTGTCGGCATGGTTCTCCGCAAGATGGGCATGCAAGTTCATCCGACTGTTTTCCTCGAAAAGAATGGCGACGAATATAGCTTCCACACCGTATCAACTTTCAAAACCACTGTAATGAAATTCAAGAATGGAGCGGAATTCGAAAATGAGACCTTGGACGGAAGAAAGGTGCAAACCGTTATTACTGTCGATGGAAATAAAATGACTCAGATTGAAAAGGGCGAGAAGAAGTCTGAAATTATTCGAGAATTTGGCGACAACGAACTTGTTGTCAAATGCGATTATGATGGCGTGATTTCAACTAGATGGTATAAACTCACAGCT
Protein: 132 (aa)
MAVWEGKKYKLDRQENFEEYMKALGVGMVLRKMGMQVHPTVFLEKNGDEYSFHTVSTFKTTVMKFKNGAEFENETLDGRKVQTVITVDGNKMTQIEKGEKKSEIIREFGDNELVVKCDYDGVISTRWYKLTA
| Type | Start | End | Length |
| CDS |
2426 |
2498 |
73 |
| CDS |
4155 |
4322 |
168 |
| CDS |
4395 |
4549 |
155 |
| intron |
2499 |
4154 |
1656 |
| intron |
4323 |
4394 |
72 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_003436444 |
AGAP013189-PA [Anopheles gambiae str. PEST] ref|XP_003436445.1| AGAP013400-PA [Anopheles gambiae str. PEST] gb|EGK97217.1| AGAP013189-PA [Anopheles gambiae str. PEST] gb|EGK97218.1| AGAP013400-PA [Anopheles gambiae str. PEST] |
3e-35 |
| InterPro |
IPR000463 |
Cytosolic fatty-acid binding |
|
| InterPro |
IPR012674 |
Calycin |
|
| InterPro |
IPR000566 |
Lipocalin/cytosolic fatty-acid binding protein domain |
|
| InterPro |
IPR011038 |
Calycin-like |
|
| Gene Ontology(BP) |
GO:0006810 |
transport |
|
| Gene Ontology(MF) |
GO:0008289 |
lipid binding |
|
| Gene Ontology(MF) |
GO:0005215 |
transporter activity |
|
| Pfam |
PF00061.18 |
Lipocalin / cytosolic fatty-acid binding protein family |
4e-16 |
| Pfam |
PF01368.15 |
DHH family |
0.044 |
| Pfam |
PF07193.6 |
Protein of unknown function (DUF1408) |
0.0061 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.06688 |
| Pn.01191 |
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP013400 |
| H. sapiens |
ENSP00000362817 |
| H. sapiens |
ENSP00000357429 |
| T. castaneum |
TC015275 |
| P. vanderplanki |
Pv.06182 |
| C. quinquefasciatus |
CPIJ018993 |
| P. vanderplanki |
Pv.15108 |
| A. gambiae |
AGAP013189 |
| D. plexippus |
DPOGS206997PA |
| P. humanus |
PHUM500900-PA |
| P. vanderplanki |
Pv.11935 |
| A. aegypti |
AAEL005997 |
| B. mori |
BGIBMGA013111-TA |
| M. musculus |
ENSMUSG00000019874 |
| P. humanus |
PHUM587770-PA |
| C. quinquefasciatus |
CPIJ013698 |
| H. sapiens |
ENSP00000348931 |
| N. vitripennis |
NV13715-PB |
| M. musculus |
ENSMUSG00000056366 |
| H. melpomene |
HMEL002112-PA |
| N. vitripennis |
NV13715-PA |
| H. sapiens |
ENSP00000256103 |
| M. musculus |
ENSMUSG00000052468 |
| D. melanogaster |
FBgn0037913 |
| P. vanderplanki |
Pv.00684 |
| M. musculus |
ENSMUSG00000028773 |
| A. mellifera |
GB15299-PA |
| P. humanus |
PHUM240020-PA |