MidgeBase gene description page [Pn.08767]
Outline
| Gene ID | Pn.08767 |
| Type | Protein coding gene |
| Scaffold | PnScaf8551 |
| Start | 60331 |
| End | 61515 |
| Direction | - |
Sequence
Transcript: 981 (bp)
ATGGATTATCTTCAAAATCTCAACCCAGCAGTGATTGCAGTCGCTATTGTGACGCTTACTGTTGCTGCTGTTGGTGCATTCTTGCTGCTCTTCAGGATGTGGATGCAGGGCGGCCAGTTCACGAAAGACACGAGAATCGACGGGAAAGTCGTCGTAATAACGGGCGCAAATGCCGGAATCGGCAAGGAAACTGCGATAGATTTGGCCAAGCGAGGCGGCAAAATTTACATCGCCTGCCGCGATCCGAAGCGCGGACAAGTGGCGCTTGCCGAAATAAAAGAGAGAAGCGAAAGTCGGAACGTGCACTTGCTACAGCTCGATCTAGCCTCGATGCACTCCATTCGGGAATTCTCCCAGAAATTCCACGAGCTCGAGAGCCAGCTGAACGTCTTGATAAACAATGCCGGCGTGATGGCCTGTCCTCGCTCCTTCACGGCCGACGGCTTCGAGCTGCAGTTCGGCACCAACCACTTGGGACACTTTCTGCTCACGAACCTGCTGCTCGACCTGCTTAAGGCCGGCGCGCCGAGTCGCATCGTGAATGTTTCGAGCATCATGCACCGCATCGGCTGGATCAAGAAGCTCGACCTGATGCGCCAGGAGAGCTACTGGAAGTGGTTCGTGTACGGACAGAGCAAGCTGGCCAACATTCTGTTTACGCTCGAGCTGAGCAAGCGGCTTGAGGGAAGCGGAGTAACGGCGAACTCGCTCCATCCGGGCATCGTTAACACTGAATTATCGCGCAACTTGGACCTGTGCTCTAAGATTTTCTTCAATCCCTTCAAGTGGCTCGTGTGCAAGACGCCGCTGGCGGGCGCCCAAACGCAGATTCGCCTCGCCGTCGATCCCGAGCTTGACGGCGTGACGGGAAAGTACTTTTCTGACTGCAGGGAGACGACACCGTCTGGTGCGGCGCGCGACGAAGAAACGGCCAAATGGCTGTGGAAGGAGAGCGAGAAGCTAACAAGTCTCGCCGTTGTC
Protein: 327 (aa)
MDYLQNLNPAVIAVAIVTLTVAAVGAFLLLFRMWMQGGQFTKDTRIDGKVVVITGANAGIGKETAIDLAKRGGKIYIACRDPKRGQVALAEIKERSESRNVHLLQLDLASMHSIREFSQKFHELESQLNVLINNAGVMACPRSFTADGFELQFGTNHLGHFLLTNLLLDLLKAGAPSRIVNVSSIMHRIGWIKKLDLMRQESYWKWFVYGQSKLANILFTLELSKRLEGSGVTANSLHPGIVNTELSRNLDLCSKIFFNPFKWLVCKTPLAGAQTQIRLAVDPELDGVTGKYFSDCRETTPSGAARDEETAKWLWKESEKLTSLAVV
| Type | Start | End | Length |
| CDS |
60334 |
60550 |
217 |
| CDS |
60624 |
60669 |
46 |
| CDS |
60732 |
61354 |
623 |
| CDS |
61421 |
61515 |
95 |
| intron |
60551 |
60623 |
73 |
| intron |
60670 |
60731 |
62 |
| intron |
61355 |
61420 |
66 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001663677 |
short-chain dehydrogenase [Aedes aegypti] gb|EAT34252.1| short-chain dehydrogenase [Aedes aegypti] |
7e-90 |
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR002347 |
Glucose/ribitol dehydrogenase |
|
| InterPro |
IPR002198 |
Short-chain dehydrogenase/reductase SDR |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF13561.1 |
Enoyl-(Acyl carrier protein) reductase |
0.011 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
0.035 |
| Pfam |
PF00670.16 |
S-adenosyl-L-homocysteine hydrolase, NAD binding domain |
0.11 |
| Pfam |
PF03435.13 |
Saccharopine dehydrogenase |
0.11 |
| Pfam |
PF08643.5 |
Fungal family of unknown function (DUF1776) |
0.0062 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
2.8e-19 |
| Pfam |
PF08659.5 |
KR domain |
1.3e-06 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes