MidgeBase gene description page [Pn.08766]
Outline
| Gene ID | Pn.08766 |
| Type | Protein coding gene |
| Scaffold | PnScaf8551 |
| Start | 57895 |
| End | 59693 |
| Direction | - |
Sequence
Transcript: 990 (bp)
ATGCAGGAATCATTAACTCACTCACTATGCACGATAACTCTAATAATCGTCTTCGTTATTCTTGGCTTGGTCGTAATTGTGTTTTTATTGAGACGGTGGATTCAGGGCGGCGAGTTCAACAGTGACGTGCGTATCGACCACAAAGTCGTCATAATTACGGGCGCAAACACCGGCATCGGCAAGGAAACCGCAATTGATTTGGCGAAGCGCGGCGGCAAAGTCTACATCGCGTGCCGCGATCCCGTGCGAGGCGTCGAGGCGCTCAAGGAAATCCAGGACAGAAGCGAGAGCAGCAACGTGTTCTTCATCCAGCTCGACCTGGCGCAGCTAGAGTCCATCCGGCAGTTCACGAAGAAATTCCTTGCCGCCGAGAATCAGCTGCACATCCTCATCAACAATGCCGGCGTGATGGCGTGCCCGCGGTCGCAGACGAGAGACGGCTTCGAGCTGCAGATCGGCACCAACCACCTGGGCCACTTCCTGCTCACGAACCTGCTGATCGAGACGATGCTCCAGTCGGCACCGGCGCGCATCATCAACGTGTCGAGTCTTTACCACATTTTCGGCTTCATCCGCACGAACGACCTCAACAGCGAGAAGCACTATTGGCGGTGGCATGCATACGCTCAGAGCAAGCTCGCCAACATCCTTTTCACGCGCGAGCTGGCGAAGCGCTTGGAGGGCACCGGCATCACTGCAAACTGCCTCCACCCGGGCTGCGTCAACACCGAGTTGACGCGAAATTTGGACTGGTTTACGAGAACATTCGTGCGGCCATGCCAGGCGTTTATTTTCAAGTCTCCATCAGCCGGCGCAAAGACGCAGATTCGCTTGGCCGTCGACCCTGAACTTGAAAACGTAACCGGCAAATATTTCGCGGATTGCAAGGAGAAAACGCCGTCGCGTCGTGCTCGCGACGACGAAATGGCCGAGTGGCTGTGGCAGACGAGCGAGGAGTGGACGGGGCTTTCGATTCCCAACACGGTTGCC
Protein: 330 (aa)
MQESLTHSLCTITLIIVFVILGLVVIVFLLRRWIQGGEFNSDVRIDHKVVIITGANTGIGKETAIDLAKRGGKVYIACRDPVRGVEALKEIQDRSESSNVFFIQLDLAQLESIRQFTKKFLAAENQLHILINNAGVMACPRSQTRDGFELQIGTNHLGHFLLTNLLIETMLQSAPARIINVSSLYHIFGFIRTNDLNSEKHYWRWHAYAQSKLANILFTRELAKRLEGTGITANCLHPGCVNTELTRNLDWFTRTFVRPCQAFIFKSPSAGAKTQIRLAVDPELENVTGKYFADCKEKTPSRRARDDEMAEWLWQTSEEWTGLSIPNTVA
| Type | Start | End | Length |
| CDS |
57898 |
58126 |
229 |
| CDS |
58240 |
58908 |
669 |
| CDS |
59602 |
59693 |
92 |
| intron |
58127 |
58239 |
113 |
| intron |
58909 |
59601 |
693 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001663677 |
short-chain dehydrogenase [Aedes aegypti] gb|EAT34252.1| short-chain dehydrogenase [Aedes aegypti] |
1e-96 |
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR002347 |
Glucose/ribitol dehydrogenase |
|
| InterPro |
IPR002198 |
Short-chain dehydrogenase/reductase SDR |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF13561.1 |
Enoyl-(Acyl carrier protein) reductase |
0.00074 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
0.0018 |
| Pfam |
PF08643.5 |
Fungal family of unknown function (DUF1776) |
0.056 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
1e-19 |
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
4.8e-07 |
| Pfam |
PF00670.16 |
S-adenosyl-L-homocysteine hydrolase, NAD binding domain |
0.018 |
| Pfam |
PF05221.12 |
S-adenosyl-L-homocysteine hydrolase |
0.081 |
| Pfam |
PF08659.5 |
KR domain |
6.7e-06 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.13119 |
| Pn.08763 |
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ011502 |
| A. gambiae |
AGAP007662 |
| P. vanderplanki |
Pv.05829 |
| A. aegypti |
AAEL013491 |
| H. sapiens |
ENSP00000438715 |
| S. invicta |
SI2.2.0_07543 |
| H. sapiens |
ENSP00000452079 |
| H. sapiens |
ENSP00000370648 |
| H. sapiens |
ENSP00000449079 |
| P. humanus |
PHUM490670-PA |
| A. gambiae |
AGAP007572 |
| M. musculus |
ENSMUSG00000066441 |
| N. vitripennis |
NV14827-PA |
| M. musculus |
ENSMUSG00000020621 |
| H. sapiens |
ENSP00000267502 |
| S. invicta |
SI2.2.0_08159 |
| C. quinquefasciatus |
CPIJ011501 |
| P. vanderplanki |
Pv.00089 |
| P. vanderplanki |
Pv.00092 |
| A. aegypti |
AAEL013483 |
| H. sapiens |
ENSP00000370750 |