MidgeBase gene description page [Pn.08765]
Outline
| Gene ID | Pn.08765 |
| Type | Protein coding gene |
| Scaffold | PnScaf8551 |
| Start | 55750 |
| End | 56985 |
| Direction | - |
Sequence
Transcript: 930 (bp)
ATGGTGGGACTTGCAATTTACGTGGTGTTAATTCTAGTAATTAGAAAGTACATGCAAGGCGGACACTACCGAAAGCCGACGCTAATTGACGGAAAAGTCGTCGTCATAACGGGCGCAAATGCCGGAATCGGAAAAGAAACCGCCGTGGATTTGGCGAAGAGAGGCGGCAAGATTTACATCGCCTGCCGCGACCCAAAACGAGGGCACGACGCTCAGATGGAGATCATCGAGAGGAGCGGAAACATGAACGTGCACTTTCTTCGGCTCGACCTGGCCTCCCTCCAGTCGATCCGAGAATTCTCGCGGAAGTTTCACGAGCTCGAGCGCGAGCTTCACATTCTAGTCAACAACGCCGGCGTCATGGCTTGCCCGAAATCCTTCACCTCAGACGGCTTCGAGATGCACATGGGAGTCAACCACCTCGGGCATTTTCTGCTCACGAATTTGCTACTCGATCTTCTCAAGGCGGCACCGGCGAGTCGGATCGTAAACGTGTCCAGCTTGTTCCACATTGTCGGCTTCATTTGGCGGAGCAATTTCTTCGGCGAGCGTTTTTATTTTCGCTGGCACGCGTATGCGACGAGCAAGCTCGCCAACATTCTGTTCACTCGCGAATTGGCGCGCCGACTGAGGGACACCAATGTCACTGTTAATGCATTGCATCCAGGTGCCGTTCACAGCGATTTGCAGCGTCATGTAAGCAGCGTAGTGAGAATACTAACTGCACCATTTCAATGGGTAATTTTCAAGGACACGCTTGCGGGCGCTCAAACGCAAATACGCCTCGCGGTCGATCCATCATTGGAGAAAGTCACGGGAAAATACTTTAGCGACTGCCGAGAGGCTTCTCCTCTGTTCACCGCGAGAAACGACGCGACGGCTAAGTGGCTATGGGAAAAGAGTGAAGAACTCACAGGACTCGCCGTGAAA
Protein: 310 (aa)
MVGLAIYVVLILVIRKYMQGGHYRKPTLIDGKVVVITGANAGIGKETAVDLAKRGGKIYIACRDPKRGHDAQMEIIERSGNMNVHFLRLDLASLQSIREFSRKFHELERELHILVNNAGVMACPKSFTSDGFEMHMGVNHLGHFLLTNLLLDLLKAAPASRIVNVSSLFHIVGFIWRSNFFGERFYFRWHAYATSKLANILFTRELARRLRDTNVTVNALHPGAVHSDLQRHVSSVVRILTAPFQWVIFKDTLAGAQTQIRLAVDPSLEKVTGKYFSDCREASPLFTARNDATAKWLWEKSEELTGLAVK
| Type | Start | End | Length |
| CDS |
55753 |
55969 |
217 |
| CDS |
56114 |
56159 |
46 |
| CDS |
56259 |
56881 |
623 |
| CDS |
56942 |
56985 |
44 |
| intron |
55970 |
56113 |
144 |
| intron |
56160 |
56258 |
99 |
| intron |
56882 |
56941 |
60 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001663677 |
short-chain dehydrogenase [Aedes aegypti] gb|EAT34252.1| short-chain dehydrogenase [Aedes aegypti] |
1e-88 |
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR002347 |
Glucose/ribitol dehydrogenase |
|
| InterPro |
IPR002198 |
Short-chain dehydrogenase/reductase SDR |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF13561.1 |
Enoyl-(Acyl carrier protein) reductase |
6.1e-05 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
7.4e-05 |
| Pfam |
PF08643.5 |
Fungal family of unknown function (DUF1776) |
0.01 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
3.6e-22 |
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
8.3e-05 |
| Pfam |
PF00670.16 |
S-adenosyl-L-homocysteine hydrolase, NAD binding domain |
0.017 |
| Pfam |
PF05221.12 |
S-adenosyl-L-homocysteine hydrolase |
0.089 |
| Pfam |
PF08659.5 |
KR domain |
3.5e-07 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA012527-TA |
| T. castaneum |
TC012770 |
| T. castaneum |
TC012769 |
| H. melpomene |
HMEL013287-PA |
| H. melpomene |
HMEL016790-PA |
| T. castaneum |
TC010965 |
| B. mori |
BGIBMGA012574-TA |
| T. castaneum |
TC011721 |
| T. castaneum |
TC012772 |
| D. plexippus |
DPOGS206844PA |
| P. vanderplanki |
Pv.00090 |
| H. sapiens |
ENSP00000378361 |
| H. sapiens |
ENSP00000412826 |
| H. melpomene |
HMEL016780-PA |
| H. sapiens |
ENSP00000368173 |
| D. plexippus |
DPOGS208999PA |
| T. castaneum |
TC011722 |