MidgeBase gene description page [Pn.08760]
Outline
| Gene ID | Pn.08760 |
| Type | Protein coding gene |
| Scaffold | PnScaf8551 |
| Start | 43597 |
| End | 44666 |
| Direction | + |
Sequence
Transcript: 960 (bp)
ATGTCTGAATCTGATTGCAACTGCAGAACATTGATGTTCACCATACTAGCCGGAATAATAGGAGCGTTATATTTGTTGAAACTTTATTTGCGGCAAGGAAAATACACAAAAGCGACAAGAATTGATGGAAAAGTCGTAATTATCACCGGAGGTAATGCAGGAATCGGAAAGGCAAATGCAATTGATCTGGCAAAACGCGGTGGAAAAATTTACATTGCCTGTCGCGATCTCCAACGAGGCGAAAAGGCGTTGAATGACATCAAACGTGAAAGTGGAAGCGAGGACGTTCATCTCATGCAACTCGATCTAGCTGATCTTCAATCTGTGCGAGATTTCTCCAAAAGGTTCCATGAAAAGGAGAATAAGCTGCATATTTTAATCAATAACGCTGGTGTGATGGGCTGCCCAAAGATGCTAACGAAAGATGGATTTGAGTTGCAACTTGGTGTCAACCATCTTGGACATTTTTTGCTCACGCATCTACTGCTTGATCTACTCAAATCCTCTTCCCCGAGTCGCATTGTCAACGTCTCGTCTCGAGCTCACATGCGCTCGGACATCATCCGTGACGATCTGATGGGAGAAAGAAGTTACAATCCGTGGACATATTACAGCCAAAGCAAGCTCGCAAACGTTTTGTTTAGCCGATACTTGGCAAAGAAGCTTGCAGGCACTGGCGTCAGTGTCAATAGCTGTCACCCCGGAGTTGTCTGCACTGAACTGGGTCGCTATATCAATCCCATCTTTCATGACTATGTTCTCATGCCCGTGGCCAGTATTTTCTTCAAGACCCCTGAAGAAGGAGCTCAAACTCAAATACGGCTAGCAGTTGATCCCGATTTGGAGAAGACCAGTGGCAAGTACTTTGTCGACTGTATGGAAGCACCAACATCGCAGTATACGGAAAGCGATGAAACTGCCGAGTGGCTGTACGAAAAGAGCAAGGAGCTCGTGAAATTG
Protein: 320 (aa)
MSESDCNCRTLMFTILAGIIGALYLLKLYLRQGKYTKATRIDGKVVIITGGNAGIGKANAIDLAKRGGKIYIACRDLQRGEKALNDIKRESGSEDVHLMQLDLADLQSVRDFSKRFHEKENKLHILINNAGVMGCPKMLTKDGFELQLGVNHLGHFLLTHLLLDLLKSSSPSRIVNVSSRAHMRSDIIRDDLMGERSYNPWTYYSQSKLANVLFSRYLAKKLAGTGVSVNSCHPGVVCTELGRYINPIFHDYVLMPVASIFFKTPEEGAQTQIRLAVDPDLEKTSGKYFVDCMEAPTSQYTESDETAEWLYEKSKELVKL
| Type | Start | End | Length |
| CDS |
43597 |
43676 |
80 |
| CDS |
43730 |
43993 |
264 |
| CDS |
44048 |
44663 |
616 |
| intron |
43677 |
43729 |
53 |
| intron |
43994 |
44047 |
54 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_308302 |
AGAP007572-PA [Anopheles gambiae str. PEST] gb|EAA04755.4| AGAP007572-PA [Anopheles gambiae str. PEST] |
1e-85 |
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR002347 |
Glucose/ribitol dehydrogenase |
|
| InterPro |
IPR002198 |
Short-chain dehydrogenase/reductase SDR |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0016491 |
oxidoreductase activity |
|
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
3.8e-07 |
| Pfam |
PF13561.1 |
Enoyl-(Acyl carrier protein) reductase |
0.00013 |
| Pfam |
PF13460.1 |
NADH(P)-binding |
0.054 |
| Pfam |
PF08643.5 |
Fungal family of unknown function (DUF1776) |
0.0045 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
8.8e-20 |
| Pfam |
PF08659.5 |
KR domain |
6.9e-07 |
| Pfam |
PF12242.3 |
NAD(P)H binding domain of trans-2-enoyl-CoA reductase |
0.043 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes