MidgeBase gene description page [Pn.08752]
Outline
| Gene ID | Pn.08752 |
| Type | Protein coding gene |
| Scaffold | PnScaf8551 |
| Start | 19909 |
| End | 21782 |
| Direction | + |
Sequence
Transcript: 741 (bp)
ATGATGGATAAGATCGAAATGAGCTTGGATGATATCATCAAACAGAACAAGAAGTCATCAGGAAAAACTCGTCGACCAGGCTTTAAGACCAATAAGAAACCCGCCTCACCAGCCAAGACAAATAAATTTGGTGGCGGCGGAATATTGAAAGGCCGTGGTCGTGGCGGAATCTCTCGTTCAAAGTACACTCGGGGTGATGTTAACAGCGCGTGGAAACATGATATGTATGAAGGTGGACGCAAAGGAGGATTAACAACTGCTGGCCGCGCGGCTGGAGGAACTACAAAACTCGTCGTTTCAAATTTGGATTTCAGCGTTTCCGATTCAGATATCAACGAACTATTTCAAGAATTTGGACCGCTTAAAGCCGCCTCAGTTCACTACGACCGCTCTGGTCGATCTCTCGGAACCGCAGACGTTATTTTTGAACGCCGAAATGATGCTCTCAAAGCCATGAAAACCTACAACGGTGTGCCATTAGATGGAAGGCCGATGAGCATTCTCATGGCAACATCTGAAATTCCGCAGCCCAGACCAGTAGCGTCATTTGGAGGCGCCAGTAAGACTCGCTCGCCACGCAAACCTATCGGAGGAGGATTTAAAGGACGCAAACCATTCCGTCGCGGTGGTGCAGGAGGTGGAGGAGGAGCAGGAGCACCTGGCAAGCGTTTTGGAAATAAAAAGCCTGAAGTCACTATTGACCAGTTGAATGCCGAACTCGATGCTTATACGATGCAATCA
Protein: 247 (aa)
MMDKIEMSLDDIIKQNKKSSGKTRRPGFKTNKKPASPAKTNKFGGGGILKGRGRGGISRSKYTRGDVNSAWKHDMYEGGRKGGLTTAGRAAGGTTKLVVSNLDFSVSDSDINELFQEFGPLKAASVHYDRSGRSLGTADVIFERRNDALKAMKTYNGVPLDGRPMSILMATSEIPQPRPVASFGGASKTRSPRKPIGGGFKGRKPFRRGGAGGGGGAGAPGKRFGNKKPEVTIDQLNAELDAYTMQS
| Type | Start | End | Length |
| CDS |
19909 |
20100 |
192 |
| CDS |
21077 |
21290 |
214 |
| CDS |
21377 |
21565 |
189 |
| CDS |
21634 |
21779 |
146 |
| intron |
20101 |
21076 |
976 |
| intron |
21291 |
21376 |
86 |
| intron |
21566 |
21633 |
68 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_309011 |
AGAP006733-PA [Anopheles gambiae str. PEST] gb|EAA04421.3| AGAP006733-PA [Anopheles gambiae str. PEST] |
5e-58 |
| InterPro |
IPR000504 |
RNA recognition motif domain |
|
| InterPro |
IPR012677 |
Nucleotide-binding, alpha-beta plait |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0003676 |
nucleic acid binding |
|
| Pfam |
PF00076.17 |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
9e-15 |
| Pfam |
PF13893.1 |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
2.3e-05 |
| Pfam |
PF07078.6 |
Forty-two-three protein |
0.00051 |
| Pfam |
PF13865.1 |
C-terminal duplication domain of Friend of PRMT1 |
0.0007 |
| Pfam |
PF14259.1 |
RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) |
1.5e-12 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| S. invicta |
SI2.2.0_14629 |
| T. castaneum |
TC011974 |
| B. mori |
BGIBMGA005323-TA |
| D. plexippus |
DPOGS207793PA |
| C. quinquefasciatus |
CPIJ007834 |
| M. musculus |
ENSMUSG00000060244 |
| H. sapiens |
ENSP00000331817 |
| P. humanus |
PHUM023420-PA |
| P. vanderplanki |
Pv.00100 |
| A. gambiae |
AGAP006733 |
| D. melanogaster |
FBgn0010774 |
| A. aegypti |
AAEL005114 |
| H. sapiens |
ENSP00000421592 |
| A. mellifera |
GB18402-PA |
| M. musculus |
ENSMUSG00000025134 |
| A. aegypti |
AAEL015263 |
| H. melpomene |
HMEL017566-PA |