MidgeBase gene description page [Pn.08679]
Outline
| Gene ID | Pn.08679 |
| Type | Protein coding gene |
| Scaffold | PnScaf8373 |
| Start | 8952 |
| End | 11838 |
| Direction | - |
Sequence
Transcript: 2259 (bp)
ATGTTCGCGCTCGGACAGACGTTCAAGAATGTACAGAGTAGCATAAAGGTGGCGGCCGAAATGCCCAACCACAGCAGCAGCCTAAATCAAAAGCCGAAAGCGGACACTCCGTCCACTTCGAGCGTACAAACGACCGTTATCAACCTTCCCACAAACAGTATCTTTAGTAGTCTCAATAGCAAGAATCAAAACTCATCCGCGAAGCCGCACTTCCAGAACCGCCCCACGAACCGGGTGCTGCCGATGCCGGCCAACGCGACCAACGTCGCAACGGTAAAGTGCAACAGCAGCCTCAACAAAGTGGGCAACGTTGGAAAGGCAAACAACAGCGGCTTGTCGTGCGGAAACACGGCCGCGCGAAATCCGTCATCGCCGTCGCTAATTGACGGCCAAAATATTGGCGCAGTGAATAATATGAACGGCGTGAGCAACAGCAACGCGCATCCGACGCTGTCGACACCGAGCGAGAGCGAAAACTACTGCGAGAAAATCAAGTCAATCGCGATGGAATTGCAGAGCAGCAACAAGAACGACGAGGTCTTCGACGCCCTCCGACGCTCAACAAACATCAACAACGTCATCCATGTCAGCTCCAGCGACAGTTTCATCGAGAAGGGCGACAAGAAGCTAAAGTTGTCGACGCCTACTTCGTCGCCGCGCTCCAACGACTCCTACTTGATTCCGTCGACGAGCGCCTCGTGCATCACCGTCCATCCGCCGAAGACTGTCGTCACCAAGACCGCGTCCGTTTGTTCCTTGACGAAAACCATCGACTCGGTCGCGACCGGCGCGAACCTCTTGGAGGAGGAGCGACCACCGTCGCCGCTGCCTCCATCGGCCATCGAGCTCATTCCGTCGTCGATCACGATCACGCCGATCGAGGCGCCCGCCATCGAGAAGGAGGCGCCGGTCGAGGAGAAGATGAACATCGAGTCGCTCATGTTCGCCGACATGCCGGAGCTGAAGGCGCCGAAGGACGCCGTGTCGACGTCGAGCGAGATCTTGACGGCGGACGACGAGGAGCCGGAGGAGGAGATGAAAATCCAGGAGAAGTCATCATTCCAGGCGTATGACGAGGAAACGACCTCCGACCGACCGAGCATGTCGTCCATCGGGTCGACCTACGCGACCAAGGCGTCGCGGGAGAAGACGCCGACGAGCACGACCTCGAGCAAGGCTTCCGGTCCGAAGCTGCTGTTCGAGATCCAGTCGCAGGACGGATTCACGTACAAGTCGACGTCGATCAATGAGATCTGGGAGAAGCTCTTCGAGACGGTGCAATTGGCGAGAAAGGCGCACGGCTTGCTGCCTCTGCCCGAGGGAAGACTGAACGAGATGACTGGGGATCAGATGCTGGGTCTGAAGACCAACGCTCTGAAGTACTTGCTCGAGCAGCTGCCAGGAGTCGAAAAGTGCACCAAATACTCGCCGAAATACCATCGAAGAAATTCATCGGCTTCATCTTCATCATCGGCCTCCTCCTTCTCATCAATGAACGGAAACTGCTCGAGCATGAGCGGCTTCTACGGCACAAGCTCTTTCTCATCGAACGCCTCGAATCTCTCGTCGAACTCCTCGATTTCGGCATCGCTCTCGTCCCTCAACCAGTACATGAGCGAGGCGGACGAGATTCTGTATGAGAACATCTACGGCTGTGCGAGATTCGAGCCGTTTAGCGTGCGCTCCGACTACGACATGTTCAGCTGGCTCGCCTCGAGACACCGTCTCGCGCCTATGCCCGTTCACTTGCAAAGCAATAATGAAGAAGTAGTTTTAAGACGTGGAACGGGCAGCAATCTCCCGATGGCTATGAAATATCGAACACTAAAGGAGACATACAAGAAGAGCGTCGGTGTCTACCGCTCTCACATACACGGTCGCGGGCTGTTCTGCACGCGAGACATCGAAGCTGGCGAGATGGTAATTGAGTACGCTGGCGAACTAATAAGATCGACATTGACTGACAAGCGCGAGCGCTACTACGATAGCAAGGGAATAGGATGCTACATGTTTAAAATAGACGAAAATTTGGTTGTCGATGCGACGATGAGTGGAACGGCAGCGCGCTTTATAAATCATTCATGCGATCCAAACTGCTACTCGAAGGTAGTCGACATTCTGGGTCAGAAGCACATCATCATCTTTGCCCTGCGTCGCATAGTGACGGGCGAGGAGCTGACATATGACTATAAGTTTGACATTGAGGACAACAAGATTCCGTGCTGTTGCGGTGCGAAACGCTGCAGAAAGTACATGAAC
Protein: 753 (aa)
MFALGQTFKNVQSSIKVAAEMPNHSSSLNQKPKADTPSTSSVQTTVINLPTNSIFSSLNSKNQNSSAKPHFQNRPTNRVLPMPANATNVATVKCNSSLNKVGNVGKANNSGLSCGNTAARNPSSPSLIDGQNIGAVNNMNGVSNSNAHPTLSTPSESENYCEKIKSIAMELQSSNKNDEVFDALRRSTNINNVIHVSSSDSFIEKGDKKLKLSTPTSSPRSNDSYLIPSTSASCITVHPPKTVVTKTASVCSLTKTIDSVATGANLLEEERPPSPLPPSAIELIPSSITITPIEAPAIEKEAPVEEKMNIESLMFADMPELKAPKDAVSTSSEILTADDEEPEEEMKIQEKSSFQAYDEETTSDRPSMSSIGSTYATKASREKTPTSTTSSKASGPKLLFEIQSQDGFTYKSTSINEIWEKLFETVQLARKAHGLLPLPEGRLNEMTGDQMLGLKTNALKYLLEQLPGVEKCTKYSPKYHRRNSSASSSSSASSFSSMNGNCSSMSGFYGTSSFSSNASNLSSNSSISASLSSLNQYMSEADEILYENIYGCARFEPFSVRSDYDMFSWLASRHRLAPMPVHLQSNNEEVVLRRGTGSNLPMAMKYRTLKETYKKSVGVYRSHIHGRGLFCTRDIEAGEMVIEYAGELIRSTLTDKRERYYDSKGIGCYMFKIDENLVVDATMSGTAARFINHSCDPNCYSKVVDILGQKHIIIFALRRIVTGEELTYDYKFDIEDNKIPCCCGAKRCRKYMN
| Type | Start | End | Length |
| CDS |
8955 |
9125 |
171 |
| CDS |
9206 |
9381 |
176 |
| CDS |
9467 |
9600 |
134 |
| CDS |
9690 |
9994 |
305 |
| CDS |
10289 |
10359 |
71 |
| CDS |
10437 |
11838 |
1402 |
| intron |
9126 |
9205 |
80 |
| intron |
9382 |
9466 |
85 |
| intron |
9601 |
9689 |
89 |
| intron |
9995 |
10288 |
294 |
| intron |
10360 |
10436 |
77 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001999480 |
GI24532 [Drosophila mojavensis] gb|EDW14941.1| GI24532 [Drosophila mojavensis] |
1e-154 |
| InterPro |
IPR015722 |
Histone-lysine N-methyltransferase |
|
| InterPro |
IPR001214 |
SET domain |
|
| InterPro |
IPR003889 |
FY-rich, C-terminal |
|
| InterPro |
IPR003616 |
Post-SET domain |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0018024 |
histone-lysine N-methyltransferase activity |
|
| Pfam |
PF05965.9 |
F/Y rich C-terminus |
7e-21 |
| Pfam |
PF00856.23 |
SET domain |
5.8e-30 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000002028 |
| H. sapiens |
ENSP00000222270 |
| A. aegypti |
AAEL010578 |
| M. musculus |
ENSMUSG00000006307 |
| H. sapiens |
ENSP00000432391 |
| H. sapiens |
ENSP00000376612 |
| H. sapiens |
ENSP00000345761 |
| H. sapiens |
ENSP00000436786 |
| H. sapiens |
ENSP00000374157 |
| H. sapiens |
ENSP00000467254 |
| C. quinquefasciatus |
CPIJ013971 |
| H. sapiens |
ENSP00000398837 |
| H. sapiens |
ENSP00000346516 |