MidgeBase gene description page [Pn.08666]
Outline
| Gene ID | Pn.08666 |
| Type | Protein coding gene |
| Scaffold | PnScaf8345 |
| Start | 9850 |
| End | 10396 |
| Direction | + |
Sequence
Transcript: 483 (bp)
ATGGAAATTAAATTCATCCTTAAGCATCGATATCTTCAAATCTCCATCGCCGTTCTCATACCCATTTTGCTGGGATTTATTTTAACGAAGATTTCGACGACTCGCAAGGAGCCTTTCTACTATGATTTGATGAAGCCAGGATATTCACCTCCCGATATCGCATTTCCGATCGCGTGGTCTCTCATCTACATCTGCATTGGATATGCTAGCTTTCGCGTATACGACAAGAAGATTGAAGCCGCCAAAATACCGCTCGTCCTGTACATCGTCCATTTATTCTTCAACATCACTTGGACCACAAGCTTCTTCTTCTTCCATCTAATCGGATTCGCTCTCTTCCATATAATTCTCGTCTTCATTCTTTTGGTCTTCACTGCACTATTGTTTTATCGCATCGATAAAATTGCAGGACTTCTCTTTATTCCCTACGGAATATGGGTGACCTATGCCTCCTGTGTAATGGTGGCGATTTTCAAGATGAAT
Protein: 161 (aa)
MEIKFILKHRYLQISIAVLIPILLGFILTKISTTRKEPFYYDLMKPGYSPPDIAFPIAWSLIYICIGYASFRVYDKKIEAAKIPLVLYIVHLFFNITWTTSFFFFHLIGFALFHIILVFILLVFTALLFYRIDKIAGLLFIPYGIWVTYASCVMVAIFKMN
| Type | Start | End | Length |
| CDS |
9850 |
10008 |
159 |
| CDS |
10070 |
10393 |
324 |
| intron |
10009 |
10069 |
61 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
YP_747284 |
TspO and MBR like proteins [Nitrosomonas eutropha C91] gb|ABI59319.1| TspO and MBR like protein [Nitrosomonas eutropha C91] |
1e-20 |
| InterPro |
IPR004307 |
TspO/MBR-related protein |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Pfam |
PF03073.10 |
TspO/MBR family |
1.7e-36 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes