MidgeBase gene description page [Pn.08654]
Outline
| Gene ID | Pn.08654 |
| Type | Protein coding gene |
| Scaffold | PnScaf8322 |
| Start | 183946 |
| End | 187022 |
| Direction | - |
Sequence
Transcript: 1212 (bp)
ATGTTTCTTAGCAAATTAAGTCTGCTAGTGGCAGCTCTCTTAAGTGTCATAAATTTCGTAAAATGCGAAAAGTTACCACAATTTACTGTATCATCCTCGGAGTTGACGCTGATTTTGAATGAAACTGAACAGATTCTGCTTCGATTAGACAAACCTCTTGGCCAGAATGTGACGATAGCCTTCTCAGAGAATCATCATGGATTGGTGACACTCGTGCCAGAGCTGTTGACAATCTTCGCAAACACTTCAGGAAACTTCAACCTAACTGTACTCGCACAATCGCCGGGCCATGTCGATGTTATTGGCAAGCCGACACCGGCAAATATCGTCGACGATTTTAATCTATTTTTCCGAATTATTGTCGCAAATTCACGTGCCATCATCTTCGTGTCGGCCATTGTTGGTTGGGTTTATTTCGTCGCATGGTCCATTTCCTTCTATCCACAATTAGTGATCAATTACAAGCGCAAGTCGGTGATTGGATTGAGTTTTGATTTTATGGCGCTCAACTTTGTGGGCCACACTCTCTATGCCATTTTTAACACGTGCCTCTACTTTGTGCCATTCTTCCAAGAGGAGTACTTTGCTCGATTCCCACGCGGTCTGAATCCGATCGAACTCAATGACGTTTTCTTCTCAATTCACGCATCATTTATTACGGCATTGACGGTCCTCCAGTGCTTCATGTATGAGCGCGGTGAACAACGAGTCTCAGACATAGCCCGCGGGATTCTCGGCATTTTTACGACAATTCTTGTTGTCATCACGATTTTGTGCGCAATCGGGCAAATTCACTGGCTAGATTTTCTTAACACCTGCAGCTATATAAAGCTGGCAATTACACTCATCAAGTACGTGCCACAGGCCATTCTTAACTACAGACGAAAATCAACAGTAGGCTGGAGCATCGGAAACATCCTTTTGGACTTCACTGGCGGCATATTGTCGATGCTTCAGATGATTTTGAACTCATACAACTACAACGACTGGCAATCGATTTTCGGTGACCCGACCAAGTTCGGCCTCGGACTATTTTCCGTACTCTTTGATATTCTCTTTATTATACAGCACTATGTCTTGTATAGAAATTTGCAGCCATACAGAACGATACCTGGCAACGAATCAGAAGCTAATTTGACTGAGAAGGATGAAGAGAACATTGCGGAAGTGGATGATAACCAAAAGCAGACCTTAAAGAGTCAACACCATAAG
Protein: 404 (aa)
MFLSKLSLLVAALLSVINFVKCEKLPQFTVSSSELTLILNETEQILLRLDKPLGQNVTIAFSENHHGLVTLVPELLTIFANTSGNFNLTVLAQSPGHVDVIGKPTPANIVDDFNLFFRIIVANSRAIIFVSAIVGWVYFVAWSISFYPQLVINYKRKSVIGLSFDFMALNFVGHTLYAIFNTCLYFVPFFQEEYFARFPRGLNPIELNDVFFSIHASFITALTVLQCFMYERGEQRVSDIARGILGIFTTILVVITILCAIGQIHWLDFLNTCSYIKLAITLIKYVPQAILNYRRKSTVGWSIGNILLDFTGGILSMLQMILNSYNYNDWQSIFGDPTKFGLGLFSVLFDILFIIQHYVLYRNLQPYRTIPGNESEANLTEKDEENIAEVDDNQKQTLKSQHHK
| Type | Start | End | Length |
| CDS |
183949 |
184075 |
127 |
| CDS |
185286 |
185388 |
103 |
| CDS |
185446 |
185734 |
289 |
| CDS |
185970 |
186513 |
544 |
| CDS |
186582 |
186678 |
97 |
| CDS |
186971 |
187022 |
52 |
| intron |
184076 |
185285 |
1210 |
| intron |
185389 |
185445 |
57 |
| intron |
185735 |
185969 |
235 |
| intron |
186514 |
186581 |
68 |
| intron |
186679 |
186970 |
292 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001651807 |
cystinosin [Aedes aegypti] gb|EAT42339.1| cystinosin [Aedes aegypti] |
1e-119 |
| InterPro |
IPR006603 |
Cystinosin/ERS1p repeat |
|
| InterPro |
IPR005282 |
Lysosomal cystine transporter |
|
| Pfam |
PF04193.9 |
PQ loop repeat |
8.7e-40 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.07856 |
| Pn.10506 |
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL006113 |
| H. sapiens |
ENSP00000371294 |
| H. sapiens |
ENSP00000046640 |
| H. melpomene |
HMEL002235-PA |
| A. gambiae |
AGAP004116 |
| A. gambiae |
AGAP004115 |
| P. vanderplanki |
Pv.07124 |
| M. musculus |
ENSMUSG00000005949 |
| P. vanderplanki |
Pv.05671 |
| A. mellifera |
GB15127-PA |
| H. sapiens |
ENSP00000411465 |
| D. melanogaster |
FBgn0039045 |
| N. vitripennis |
NV17817-PA |
| P. humanus |
PHUM105090-PA |
| B. mori |
BGIBMGA000222-TA |
| C. quinquefasciatus |
CPIJ008456 |
| D. plexippus |
DPOGS210114PA |
| T. castaneum |
TC016287 |