MidgeBase gene description page [Pn.08631]
Outline
| Gene ID | Pn.08631 |
| Type | Protein coding gene |
| Scaffold | PnScaf8322 |
| Start | 25969 |
| End | 29393 |
| Direction | + |
Sequence
Transcript: 3114 (bp)
ATGAAAATTATCTTCTTGATTGTACTGGTGGTCGCAACGACCGCTTGTGCCTATCGAGCGCGTGAAAATTTTAATGTTTTGGTGCCAAACAATGACGTGAACGTTCATGCAAATATCAAGAAACTGCTCGCCGATGATGACTTCGATCCGCAAGAAGTCAGAGAATTCATTAAAATTGATAGACTTCTGAAGCCATTGATTGATGTTAAATTTGAAATTGAAAAGGCAGCTCCACCACCATCACCGCGCTCAAAAATAGTTGGCGATGATGATATCAGCAGTAGTGGCAGTAGCTCAGACGATTCAGATGTTCTTCTGCAAAGGACGAGGAAAAGAACAACATCGACCACATTGCCATTCCTTGAAGACGCACGTGAATATCCAGGAAGCAATGTAACATATCCGAATGCCACTTGGCCTACAACTACACCCTTCCCTTCAGAACCGTGGAATTTTTCAACATCAAATATTTACAACGTATCCACACCATCTTGGGACTACACAACGCCCTCTATGAACCAAACGACCACTCATATTGAAACCACATCTACTTGGAACTTCAACCTTTCGTTACCCGCAACTACGCCCAATATCAATTCGACTACTACTTCATTTTACTGGAATCTGAGTACGCCAGGAGTTTCCAGTTACACTACGCCCACTTGGGATTTTAACTCTACAACGCCTCACACACCGGCAGACTTGAACATATCGTCCTCAACCCCGCCCTATGCTTCTACACCGATGACCCCCAACAACACTACACCCGGTTTGAATTTCTCAACTACACCGCCACTAACACCGCCAGAACTTTTGGATACCACACATTTTCATAACTTCACCGACTCTTCAACTCCCCAGCATCCTTCGACTGTTGTACACTACACAAGCACCAAAGCAACTCCAACGGACGAGAACTCAACGGCAAACGAAGAGTGCTTGCTAGGAAAAGTGAGCGAGACCCTGAAGTGGGTGGACGAGTATGGCGCTCTGCAGATGGGCTACATACGGGAGCATCAGGAGATGAGTAGCCTTAAAGCTGCCGATTTTTCACGGCACGAATTTTCATCGCCCTACGCTATCGAACGGGACGTTCAAGTTCTCTCGCTGGCTTACAACAATTTTGATAGATTGCCAAACGTGCTGCTGAACGAGCCGATGCACAGCCTTCAATATTTGTCGCTGGCGGGAAACCAATTTAGAGTTTTAGGAATCGGCGACACACTGATGCTTCCCAATTTGAAGCAGCTAGACCTGCGCAAGTGCTCAATTAGCGACTTCAAGCCAGATTTGTTCAGAAACTTACCGGCACTCGTTTACCTGTATTTGTCGGACAACAACATTAACAACCTCATGGACGAGGACCTCAACCTTCCATCGCTCGAGCACCTCGATTTGTCATCGAACCGAGAAGATGCGCTCATTCAGAGTGGTCTGAAGATTAAGTCGAATGTTTTTTCGCACATGAGAAACTTGAAATTTTTGGATCTTTCGCACACGAAACTCGACACGAAGGCAGTCGAAGCGCTCGAACATCTGCCGACATCGCTGATTGGCGTGAGTCTCTGCTACACAGAGCTATCGACGAGCGACAATTTTTTGGCAAATCTCAGCAACCTCAAGTACCTCGATTTGTCGGGCAACACGCAGCTGAACTTAACGAAGAACTTTTTCAGCAACATTTCCTACAGCCTCGAACGTCTGGAGGCGAAGGACGCGAACGTGAGGAACTTGGAATGGACGCATCCGTTGATAAAACTTAAAGTTTTGAACTTGAAAGACAACAAGCTGAAGCTCATCGACAACAACTCGTTTTCGCACATGCTCGTGCTCGAGGACCTAAATTTGTCGAAGAACTCAATCGTCAACTGGTACACGCGCCTTTTCGGCCAAAATCAGGAACTCGAAACTCTGGATTTGCGCGAAAACGCGCTCACCTTCATAAGCGACGAGATGCGCGAGGATTTACTGAGCGTCAGACACCTCGCAATTGGCAAGAACGCTTTCGAGTGCAACTGCCTTCTCTACGAGTTTTTTCACAAGCTCTTCGATGCAACAAAAAATGCAAACATCCAGCAAATCGAGGAGGGATTAAAAATCCCCTCCTCACAGCAATCGACGCTGCCAACACTGCAGCTCGGCGCTCGAAACAATCTGAGGCCGGAGTACGACATCATGTCGAGGACATATCAGAAGTACTACGAGCAGATTCTGAGGAGCATCGAGGCACTTAAGAAGAACAATTACAGCACGAAATCGAAGGCTCTTTTGTCGGTGTCAGACGTAGAGTCGACGGAGCTAAAGCCGCCACAGACGGTGCTCCTCGACTACGACGAGAACAATGAGGATTATCAGTGCATGAACAAGACGCAGAAGGCGCTGCAATCGATGCTCGACTTAATTGAGCTGTGCGCAAACGAAGCGCGAGATCCGTCGTATGATAGCCTCATAATTGCACTTTCCGCCGCCATACCTTCGGTGCTGCTCCTTTCCGTGCTAATCGTCGTCATCATCTGGCGATGGTACGACATCCGATACTTCTTTGTCATCTGCAAAAACGCCGCAATTCTCAGCTTCATGGATGGCGGCGACGATAGGGAGGAAGTAATTGTGCGACGCAAGAGCACGTCGAGCTCAATCGACATTTATCTGTACGACGTGTTCGTCAGCTACTCCGACCAGAATCGCTCGTGGGTGCTGGACGAGTTCATTCCAAATATCGAGAGACGCGAGTCGATAAATGTGTGCCTCCACGAGCGTGACTTTCAGGTGGGCTACGGAATCCTCGAGAACATCGTGTCGTGCATGGATCGGTCGCGATGCTTGCTGCTGCTCGTGAGCGAACAGTTCTTGGAGAGTCAGTGGTGTCAGTTCGAGATGAACCTCGCGCAGCATCGACTGCTCGAGACACGCAAAGAGAAGCTCATCTTGGTGCTGCTCGAGGACATTCCCGCGCGAAAGCAGTCGAAAACGCTGAAGTATCTAATGCGCACAAAAACGTACATAAAATGGCCGAACAACGGCACGCACGAGGAGAAACAATTGTTTTGGAAGCGTTTGAAGAAATCGATAATTTCGAGTAAATGGGAATGCGAGAACTACGGCAGCACTGCG
Protein: 1038 (aa)
MKIIFLIVLVVATTACAYRARENFNVLVPNNDVNVHANIKKLLADDDFDPQEVREFIKIDRLLKPLIDVKFEIEKAAPPPSPRSKIVGDDDISSSGSSSDDSDVLLQRTRKRTTSTTLPFLEDAREYPGSNVTYPNATWPTTTPFPSEPWNFSTSNIYNVSTPSWDYTTPSMNQTTTHIETTSTWNFNLSLPATTPNINSTTTSFYWNLSTPGVSSYTTPTWDFNSTTPHTPADLNISSSTPPYASTPMTPNNTTPGLNFSTTPPLTPPELLDTTHFHNFTDSSTPQHPSTVVHYTSTKATPTDENSTANEECLLGKVSETLKWVDEYGALQMGYIREHQEMSSLKAADFSRHEFSSPYAIERDVQVLSLAYNNFDRLPNVLLNEPMHSLQYLSLAGNQFRVLGIGDTLMLPNLKQLDLRKCSISDFKPDLFRNLPALVYLYLSDNNINNLMDEDLNLPSLEHLDLSSNREDALIQSGLKIKSNVFSHMRNLKFLDLSHTKLDTKAVEALEHLPTSLIGVSLCYTELSTSDNFLANLSNLKYLDLSGNTQLNLTKNFFSNISYSLERLEAKDANVRNLEWTHPLIKLKVLNLKDNKLKLIDNNSFSHMLVLEDLNLSKNSIVNWYTRLFGQNQELETLDLRENALTFISDEMREDLLSVRHLAIGKNAFECNCLLYEFFHKLFDATKNANIQQIEEGLKIPSSQQSTLPTLQLGARNNLRPEYDIMSRTYQKYYEQILRSIEALKKNNYSTKSKALLSVSDVESTELKPPQTVLLDYDENNEDYQCMNKTQKALQSMLDLIELCANEARDPSYDSLIIALSAAIPSVLLLSVLIVVIIWRWYDIRYFFVICKNAAILSFMDGGDDREEVIVRRKSTSSSIDIYLYDVFVSYSDQNRSWVLDEFIPNIERRESINVCLHERDFQVGYGILENIVSCMDRSRCLLLLVSEQFLESQWCQFEMNLAQHRLLETRKEKLILVLLEDIPARKQSKTLKYLMRTKTYIKWPNNGTHEEKQLFWKRLKKSIISSKWECENYGSTA
| Type | Start | End | Length |
| CDS |
25969 |
27057 |
1089 |
| CDS |
27301 |
27421 |
121 |
| CDS |
27487 |
29390 |
1904 |
| intron |
27058 |
27300 |
243 |
| intron |
27422 |
27486 |
65 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001848199 |
Toll9 [Culex quinquefasciatus] gb|EDS27864.1| Toll9 [Culex quinquefasciatus] |
1e-108 |
| InterPro |
IPR003591 |
Leucine-rich repeat, typical subtype |
|
| InterPro |
IPR001611 |
Leucine-rich repeat |
|
| InterPro |
IPR000157 |
Toll/interleukin-1 receptor homology (TIR) domain |
|
| InterPro |
IPR004075 |
Interleukin-1 receptor, type I/Toll precursor |
|
| Gene Ontology(BP) |
GO:0007165 |
signal transduction |
|
| Gene Ontology(BP) |
GO:0045087 |
innate immune response |
|
| Gene Ontology(CC) |
GO:0031224 |
intrinsic to membrane |
|
| Gene Ontology(CC) |
GO:0005622 |
intracellular |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0004888 |
transmembrane signaling receptor activity |
|
| Pfam |
PF13855.1 |
Leucine rich repeat |
6.6e-31 |
| Pfam |
PF12799.2 |
Leucine Rich repeats (2 copies) |
1.6e-23 |
| Pfam |
PF13676.1 |
TIR domain |
3.4e-13 |
| Pfam |
PF01582.15 |
TIR domain |
1.7e-30 |
| Pfam |
PF13504.1 |
Leucine rich repeat |
3e-10 |
| Pfam |
PF08937.6 |
MTH538 TIR-like domain (DUF1863) |
8.7e-05 |
| Pfam |
PF00560.28 |
Leucine Rich Repeat |
7.7e-12 |
| Pfam |
PF13516.1 |
Leucine Rich repeat |
9.5e-09 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0036978 |
| P. vanderplanki |
Pv.10740 |
| C. quinquefasciatus |
CPIJ006515 |
| D. plexippus |
DPOGS205123PA |
| H. melpomene |
HMEL006338-PA |
| A. aegypti |
AAEL011734 |
| A. aegypti |
AAEL014896 |
| A. aegypti |
AAEL013441 |
| A. gambiae |
AGAP006974 |
| P. humanus |
PHUM006690-PA |
| B. mori |
BGIBMGA011216-TA |
| C. quinquefasciatus |
CPIJ006150 |
| P. vanderplanki |
Pv.02383 |